[maker-devel] Names/IDs from pred_gff are included in final gff

[Carson Holt]

pred_gff will maintain it’s name in the match/match_part feature as the information is pulled directly from the input GFF3. But any pred_gff feature that becomes a final model will be renamed to something like “scaffold_1517-pred_gff_GeneMark.hmm-gene-0.6-mRNA-1” unless you specify map_forward=1 to maintain the original name.

—Carson



> On Jan 4, 2018, at 6:21 AM, Ole Kristian Tørresen <o.k.torresen at ibv.uio.no> wrote:
> 
> Hi,
> as far as I can see, names or IDs of features in gffs given to pred_gff is included in the final output as the name of the feature. As far as I can understand, this is not expected behaviour (it is for model_gff). This is with MAKER 2.31.9.
> 
> I have these settings:
> map_forward=0 
> keep_preds=1 
> 
> I thought that map_forward had to be 1 to get the names for the old GFFs. Can you replicate this?
> 
> Thank you.
> 
> Sincerely,
> Ole K. Tørresen
> 
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