<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Daniel,<div><br></div><div>Did you remember to set the ZOE environment variable for snap? Something like this:</div><div><br></div><div>export ZOE=where_snap_is_installed # for bash</div><div><br></div><div>or this:</div><div><br></div><div>setenv ZOE where_snap_is_installed # for tcsh</div><div><br></div><div><br><div><div>On Sep 22, 2009, at 5:21 PM, Daniel Standage wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hi all,<br><br>I am trying to get Maker working on our system. I finally have all of the prerequisites installed, and they all appear to be working fine. I'm now using the example data to test maker and it is not working. I created a directory for the test, copied over the test data, generated the control files, and made the following changes to the control files.<br> <ul><li>In maker_bopts.ctl</li><ul><li>blast_type:ncbi</li></ul><li>In maker_opts.ctl</li><ul><li>genome:dpp_contig.fasta</li><li>est:dpp_transcripts.fasta</li><li>protein:dpp_proteins.fasta<br></li><li>snaphmm:fly<br></li> <li>predictor:snap</li></ul></ul>Then when I run maker (using the command <font style="color: rgb(102, 102, 102);" size="2"><span style="font-family: courier new,monospace;">maker maker_exe.ctl maker_opts.ctl maker_bopts.ctl</span></font>), it gives the following error message.<br> <br><font style="color: rgb(102, 102, 102);" size="2"><span style="font-family: courier new,monospace;">#----------------------</span><br style="font-family: courier new,monospace;"><span style="font-family: courier new,monospace;">FATAL: failed!!</span><br style="font-family: courier new,monospace;"> <span style="font-family: courier new,monospace;">#----------------------</span><br style="font-family: courier new,monospace;"><span style="font-family: courier new,monospace;">ERROR: The snaphmm specified for Snap/Fathom in maker_opts.ctl does not exist.</span></font><br> <br>I verified that there is a "fly" file in SNAP's HMM directory, so I don't know what could be causing this. Does anyone have any insight?<br><br>Thanks,<br><br>Daniel Standage<br>Plant Genetics Lab<br> Brigham Young University<br> <span><ATT00001.txt></span></blockquote></div><br></div></body></html>