cross_match p53_sequence_data.fasta 
cross_match version 1.080728
Reading parameters ... 1.008 Mbytes allocated -- total 1.008 Mbytes
Run date:time  090928:073541
 Done
Total space allocated: 1.008 Mbytes; currently free: 0.973 Mbytes in 2 blocks
Reading query file into memory ... Done
Total space allocated: 1.008 Mbytes; currently free: 0.364 Mbytes in 2 blocks
Complementing ... Done
Total space allocated: 1.008 Mbytes; currently free: 0.364 Mbytes in 2 blocks
Allocating align_entries ... Done
Total space allocated: 1.008 Mbytes; currently free: 0.340 Mbytes in 2 blocks
Reading quality files ...

NO QUALITY FILE p53_sequence_data.fasta.qual WAS FOUND. REMAINING INPUT QUALITIES SET TO 15. Done
Total space allocated: 1.008 Mbytes; currently free: 0.340 Mbytes in 2 blocks
34.272 Mbytes allocated -- total 35.280 Mbytes
Indexing words ...67.536 Mbytes allocated -- total 102.816 Mbytes
 Done
Total space allocated: 102.816 Mbytes; currently free: 1.377 Mbytes in 4 blocks
Sorting words ... Done
Total space allocated: 102.816 Mbytes; currently free: 1.377 Mbytes in 4 blocks
Finding word boundaries ... Done
Total space allocated: 102.816 Mbytes; currently free: 1.353 Mbytes in 4 blocks
Finding complement word matches ... Done
Total space allocated: 102.816 Mbytes; currently free: 1.353 Mbytes in 4 blocks
Finding internal word matches ... Done
Total space allocated: 102.816 Mbytes; currently free: 0.873 Mbytes in 4 blocks
Freeing word arrays ... Done
Total space allocated: 102.816 Mbytes; currently free: 101.656 Mbytes in 5 blocks
Finding duplicates ...  Done
Total space allocated: 102.816 Mbytes; currently free: 101.656 Mbytes in 5 blocks
SWATTING ... Allocating alignment string: 10 0  Done
Total space allocated: 102.816 Mbytes; currently free: 99.185 Mbytes in 5 blocks
Quickalign: 157 successes, 144 failures
788 SWAT alignments performed. 74 pairs have score >= 30
Making reversed pairs ... Done
Total space allocated: 102.816 Mbytes; currently free: 99.665 Mbytes in 5 blocks
Printing matches ... Sorting pairs ... Done