<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Daniel -<div><br></div><div>Just download, unpackage the precompiled (<span class="Apple-style-span" style="font-family: verdana, sans-serif; font-size: small; "><span style="color: rgb(0, 0, 0); "> </span></span><span class="Apple-style-span" style="font-family: verdana, sans-serif; font-size: small; "><span style="color: rgb(0, 0, 0); ">rmblast-1.2-ncbi-blast-2.2.23+-x64-linux.tar.gz ) </span></span>version and tell RepeatMasker where the exes are when you configure RepeatMasker. RMBlast is for RepeatMasker.<div> </div><div>For running BLAST in MAKAER would install NCBI-BLAST+ if you don't have wu-blast --- <a href="ftp://ftp.ncbi.nih.gov/blast/executables/blast+/LATEST">ftp://ftp.ncbi.nih.gov/blast/executables/blast+/LATEST</a> - I believe current maker supports BLAST+, BLAST, and WU-BLAST so you have your pick.</div></div><div><br></div><div>Jason</div><div><div>On Mar 25, 2012, at 7:53 PM, Daniel Fernández wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><font size="2" face="verdana, sans-serif">Hi,</font><div><font size="2" face="verdana, sans-serif"><br></font></div><div><font size="2" face="verdana, sans-serif">I trying to install MAKER, I don't have WU-Blast, I have Blast+ so in the README file tell me that I need RMBlast, but I don't know what file I have to choose, <span style="color: rgb(0, 0, 0); ">rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz or </span><span style="color: rgb(0, 0, 0); ">rmblast-1.2-ncbi-blast-2.2.23+-x64-linux.tar.gz (I have Linux 64-bit) in each version the README file is the same, and there tell me how I can install it, but the instructions is only for </span></font><span style="color: rgb(0, 0, 0); font-family: verdana, sans-serif; font-size: small; ">rmblast-1.2-ncbi-blast-2.2.23+-src, well, when I try to install it, I type this </span><div><span style="color: rgb(0, 0, 0); font-family: verdana, sans-serif; font-size: small; ">$</span><font color="#000000" face="verdana, sans-serif" size="2">./configure --with-mt --prefix=/usr/local/bioinfo/repeatmasker/rmblast --without-debug</font></div><div><font color="#000000" face="verdana, sans-serif" size="2">This show me error, and I type make and this show stop.</font></div><div><font color="#000000" face="verdana, sans-serif" size="2"><br></font></div><div><font color="#000000" face="verdana, sans-serif" size="2">Can you help me please?</font></div><div><font color="#000000" face="verdana, sans-serif" size="2"><br></font></div><div><font color="#000000" face="verdana, sans-serif" size="2">This show me when I type </font><span style="font-size: small; color: rgb(0, 0, 0); font-family: verdana, sans-serif; ">$</span><font color="#000000" face="verdana, sans-serif" size="2">./configure --with-mt --prefix=/usr/local/bioinfo/repeatmasker/rmblast --without-debug</font></div><div><font color="#000000" face="verdana, sans-serif" size="2">-----------------------------------------------------------------------------------------------------------------------------------------------</font></div><div><font color="#000000" face="verdana, sans-serif" size="2"><div>configure: loading site script ./src/build-system/config.site</div><div>configure: loading cache config.cache<br></div><div>checking build system type... x86_64-unknown-linux-gnu</div><div>checking host system type... x86_64-unknown-linux-gnu</div><div>checking for a BSD-compatible install... /usr/bin/install -c</div><div>checking for gcc... gcc</div><div>checking for C compiler default output file name... a.out</div><div>checking whether the C compiler works... yes</div><div>checking whether we are cross compiling... no</div><div>checking for suffix of executables... </div><div>checking for suffix of object files... o</div><div>checking whether we are using the GNU C compiler... yes</div><div>checking whether gcc accepts -g... yes</div><div>checking for gcc option to accept ANSI C... none needed</div><div>checking for g++... no</div><div>checking for c++... no</div><div>checking for gpp... no</div><div>checking for aCC... no</div><div>checking for CC... no</div><div>checking for cxx... no</div><div>checking for cc++... no</div><div>checking for cl... no</div><div>checking for FCC... no</div><div>checking for KCC... no</div><div>checking for RCC... no</div><div>checking for xlC_r... no</div><div>checking for xlC... no</div><div>checking whether we are using the GNU C++ compiler... no</div><div>checking whether g++ accepts -g... no</div><div>adjusted C compiler: /usr/bin/gcc </div><div>./src/build-system/configure: line 4404: type: g++: not found</div><div>dirname: missing operand</div><div>Try `dirname --help' for more information.</div><div>configure: error: Do not know how to build MT-safe with compiler g++ ./src/build-system/configure: line 4187: g++: command not found</div><div>-----------------------------------------------------------------------------------------------------------------------------------</div></font></div></div>_______________________________________________<br>maker-devel mailing list<br><a href="mailto:maker-devel@box290.bluehost.com">maker-devel@box290.bluehost.com</a><br>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org<br></blockquote></div><br><div apple-content-edited="true">
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div>Jason Stajich</div><div><a href="mailto:jason.stajich@gmail.com">jason.stajich@gmail.com</a></div><div><a href="mailto:jason@bioperl.org">jason@bioperl.org</a></div></span>
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