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First, thanks by help me on the lprevious error that I submitted.<br>I'm still working in the same project and I get a new error. I try interproscan with this commandline:<br><br>iprscan_wrap -i parsed_input.all.maker.proteins.fasta -email seoanezonjic@hotmail.com -format raw<br><br>parsed_input.all.maker.proteins.fasta was generated with the tool fasta_merge. I use the output (attached in this email) and a gff file (generated by a normal run of maker, attached in this email) with the ipr_update_gff script of this way:<br><br>ipr_update_gff BAC12_Clone_Pt314B2_Lib_Pt_7Ba__organism_Pinus_taeda__0.gff sc_interpro.sh.o109053<br><br>And i get this error:<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 1.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 1.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 2.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 2.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 3.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 3.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 8.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 8.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 9.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 9.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 10.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 10.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 11.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 11.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 12.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 12.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 13.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 13.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 14.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 14.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 15.<br>Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 15.<br>Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 18.<br>Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 18.<br>Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 18.<br>Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 18.<br>Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 19.<br>Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 19.<br>Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 19.<br>Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 19.<br>Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 48.<br>Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 48.<br>Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 48.<br>Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 48.<br>Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 49.<br>Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 49.<br>Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 49.<br>Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 49.<br><br>The gff file seems updated but i don't know if it works fine or is corrupt<br>Thanks in advance<br> </div></body>
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