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<p class="MsoNormal"><span style="color:#1F497D">Thanks!<o:p></o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Carson Holt [mailto:carsonhh@gmail.com]
<br>
<b>Sent:</b> Tuesday, July 31, 2012 6:01 AM<br>
<b>To:</b> Shane Brubaker; maker-devel@yandell-lab.org<br>
<b>Subject:</b> Re: [maker-devel] CDS file?<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Use the fasta_tool script that comes with MAKER together with the --trim_maker_utr option.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Thanks,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">Carson<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="color:black">From: </span></b><span style="color:black">Shane Brubaker <<a href="mailto:sbrubaker@solazyme.com">sbrubaker@solazyme.com</a>><br>
<b>Date: </b>Monday, 30 July, 2012 7:52 PM<br>
<b>To: </b>"<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>" <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br>
<b>Subject: </b>[maker-devel] CDS file?<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="color:black">Hi, does anyone know if maker outputs a file of just the CDS portion of transcripts? I want to use it to determine a codon usage table.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black"> <o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">Thanks,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">Shane<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.5pt;color:black">_______________________________________________ maker-devel mailing list
<a href="mailto:maker-devel@box290.bluehost.com">maker-devel@box290.bluehost.com</a>
<a href="http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org">
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org</a> <o:p>
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