<html dir="ltr">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<style type="text/css" id="owaParaStyle"></style>
</head>
<body fpstyle="1" ocsi="0">
<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi Kapeel,
<div><br>
</div>
<div>I think we need some more information about the settings that you're running maker with. Can you give more of the output around the error? Also, since maker is dying during the repeatmasking stage, can you tell us more about the settings you have for RepeatMasker?</div>
<div><br>
</div>
<div>Thanks,</div>
<div>Daniel <br>
<div><br>
<div class="BodyFragment"><font size="2">
<div class="PlainText">Daniel Ence<br>
Graduate Student<br>
Eccles Institute of Human Genetics<br>
University of Utah<br>
15 North 2030 East, Room 2100<br>
Salt Lake City, UT 84112-5330</div>
</font></div>
</div>
<div style="font-family: Times New Roman; color: #000000; font-size: 16px">
<hr tabindex="-1">
<div id="divRpF291179" style="direction: ltr;"><font face="Tahoma" size="2" color="#000000"><b>From:</b> maker-devel-bounces@yandell-lab.org [maker-devel-bounces@yandell-lab.org] on behalf of Kapeel Chougule [kapeelc@gmail.com]<br>
<b>Sent:</b> Tuesday, November 27, 2012 6:23 PM<br>
<b>To:</b> maker-devel@yandell-lab.org<br>
<b>Subject:</b> [maker-devel] Maker error message<br>
</font><br>
</div>
<div></div>
<div>
<div>Hi,</div>
<div><br>
</div>
<div>I recently ran into this error for chr5. I am using maker 2.26 . </div>
<div><br>
</div>
<div>DiedERROR: Failed while processing all repeats</div>
<div>ERROR: Chunk failed at level:3, tier_type:1</div>
<div>FAILED CONTIG:Chr5</div>
<div><br>
</div>
<div>ERROR: Chunk failed at level:2, tier_type:0</div>
<div>FAILED CONTIG:Chr5</div>
<div><br>
</div>
<div>Could someone help me understand this error and why its happening?</div>
<div><br>
</div>
<div>Thanks,</div>
<div><br>
</div>
-- <br>
<font face="'courier new', monospace"><b>
<div><br>
</div>
<div>Kapeel Chougule</div>
<div>Systems Programmer</div>
<div>Arizona Genomics Institute (AGI)</div>
<div>Thomas W. Keating Bioresearch Building</div>
<div>University of Arizona</div>
<div>1657 E. Helen Street</div>
<div>Tucson, AZ 85719 </div>
<div><a href="http://www.genome.arizona.edu" target="_blank">www.genome.arizona.edu</a></div>
</b></font><br>
</div>
</div>
</div>
</div>
</body>
</html>