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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Ok that makes sense – Thanks!<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Sincerely,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Shane Brubaker<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Director of BioInformatics<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Solazyme, Inc.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">225 Gateway Blvd.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">S. San Francisco, CA 94080<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Michael Campbell [mailto:michael.s.campbell1@gmail.com]
<br>
<b>Sent:</b> Thursday, January 24, 2013 12:47 PM<br>
<b>To:</b> Carson Holt<br>
<b>Cc:</b> Shane Brubaker; MeiYee Law; Mark Yandell; Maker Mailing List<br>
<b>Subject:</b> Re: FW: [maker-devel] Maker-P<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Hi all,<o:p></o:p></p>
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<p class="MsoNormal">I'l' take a shot at answering this one. <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">MAKER-P is largely a project name and represents our efforts to benchmark and improve MAKER's performance on plants. The version 2.27 release of MAKER has bug fixes and performance enhancements incorporated as a result of things we learned
while bench marking MAKER on arabidopsis and maize; and the de novo annotation of sacred lotus and the algae Nannochloropsis. These changes did not impair MAKER's performance on animal genomes, so at this point we have opted not to maintain two versions of
MAKER.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Other people on the project are welcome to weigh in if they would like.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt">Mike<o:p></o:p></p>
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<p class="MsoNormal">On Thu, Jan 24, 2013 at 1:31 PM, Carson Holt <<a href="mailto:carsonhh@gmail.com" target="_blank">carsonhh@gmail.com</a>> wrote:<o:p></o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt">I'm forwarding this to the most relevant people.<br>
<br>
--Carson<br>
<br>
<br>
On 13-01-24 3:17 PM, "Shane Brubaker" <<a href="mailto:sbrubaker@solazyme.com">sbrubaker@solazyme.com</a>> wrote:<br>
<br>
>Hi, I heard about Maker-P at PAG. We are working on an algae, which is<br>
>closer to plants than just about anything else - I am wondering, would<br>
>Maker-P be useful for us to use instead of regular Maker?<br>
><br>
>_______________________________________________<br>
>maker-devel mailing list<br>
><a href="mailto:maker-devel@box290.bluehost.com">maker-devel@box290.bluehost.com</a><br>
><a href="http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org" target="_blank">http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org</a><br>
<br>
<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt">-- <br>
Michael Campbell MS, RD.<br>
Graduate Student<br>
Eccles Institute of Human Genetics<br>
University of Utah<br>
15 North 2030 East, Room 2100<br>
Salt Lake City, UT 84112-5330<br>
ph:585-3543<o:p></o:p></p>
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