<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif; "><div>I had problems moving from OS X 10.5 to 10.6 and from 10.6 to 10.7. All of which were solved by reinstalling fink (for the right processor – 32bit vs 64bit) and all tools and libraries I had from fink.</div><div><br></div><div>Thanks,</div><div>Carson</div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Daniel Ence <<a href="mailto:dence@genetics.utah.edu">dence@genetics.utah.edu</a>><br><span style="font-weight:bold">Date: </span> Tuesday, 29 January, 2013 11:58 AM<br><span style="font-weight:bold">To: </span> Maker Mailing List <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>>, Carson Holt <<a href="mailto:carsonhh@gmail.com">carsonhh@gmail.com</a>><br><span style="font-weight:bold">Cc: </span> "<a href="mailto:alexmendozasoler@gmail.com">alexmendozasoler@gmail.com</a>" <<a href="mailto:alexmendozasoler@gmail.com">alexmendozasoler@gmail.com</a>><br><span style="font-weight:bold">Subject: </span> RE: [maker-devel] Fwd: Help in installation of MAKER2<br></div><div><br></div><div dir="ltr"><meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"><style type="text/css" id="owaParaStyle"></style><div style="word-wrap:break-word" fpstyle="1" ocsi="0"><div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Carson, Could this be related to the OSX Lion's support for exonerate's c-libraries? I think I remember you saying there were some difficulties with that when you upgraded your
computer.
<div><br></div><div>Daniel<br><div><br><div class="BodyFragment"><font size="2"><div class="PlainText">Daniel Ence<br>
Graduate Student<br>
Eccles Institute of Human Genetics<br>
University of Utah<br>
15 North 2030 East, Room 2100<br>
Salt Lake City, UT 84112-5330</div></font></div></div><div style="font-family: Times New Roman; color: #000000; font-size: 16px"><hr tabindex="-1"><div id="divRpF744219" style="direction: ltr;"><font face="Tahoma" size="2" color="#000000"><b>From:</b> <a href="mailto:maker-devel-bounces@yandell-lab.org">maker-devel-bounces@yandell-lab.org</a> [<a href="mailto:maker-devel-bounces@yandell-lab.org">maker-devel-bounces@yandell-lab.org</a>] on behalf of Barry Moore [<a href="mailto:barry.moore@genetics.utah.edu">barry.moore@genetics.utah.edu</a>]<br><b>Sent:</b> Tuesday, January 29, 2013 9:50 AM<br><b>To:</b> Maker Mailing List<br><b>Cc:</b> <a href="mailto:alexmendozasoler@gmail.com">alexmendozasoler@gmail.com</a><br><b>Subject:</b> [maker-devel] Fwd: Help in installation of MAKER2<br></font><br></div><div></div><div>Hi Alex,
<div><br></div><div>I'm forwarding your question to the Maker mailing list in hopes that some other maker users may have recently encountered and solved the same exonerate/Mac install issues that you are encountering.</div><div><br></div><div>Barry<br><div><br><div>Begin forwarded message:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="margin-top:0px; margin-right:0px; margin-bottom:0px; margin-left:0px"><span style="font-family:'Helvetica'; font-size:medium"><b>From: </b></span><span style="font-family:'Helvetica'; font-size:medium">Alexandre Mendoza Soler <<a href="mailto:alexmendozasoler@gmail.com" target="_blank">alexmendozasoler@gmail.com</a>><br></span></div><div style="margin-top:0px; margin-right:0px; margin-bottom:0px; margin-left:0px"><span style="font-family:'Helvetica'; font-size:medium"><b>Subject: </b></span><span style="font-family:'Helvetica'; font-size:medium"><b>Help in installation of MAKER2</b><br></span></div><div style="margin-top:0px; margin-right:0px; margin-bottom:0px; margin-left:0px"><span style="font-family:'Helvetica'; font-size:medium"><b>Date: </b></span><span style="font-family:'Helvetica'; font-size:medium">January 29, 2013 4:45:49 AM MST<br></span></div><div style="margin-top:0px; margin-right:0px; margin-bottom:0px; margin-left:0px"><span style="font-family:'Helvetica'; font-size:medium"><b>To: </b></span><span style="font-family:'Helvetica'; font-size:medium"><<a href="mailto:barry.moore@genetics.utah.edu" target="_blank">barry.moore@genetics.utah.edu</a>><br></span></div><br><div dir="ltr">Hi Barry,
<div><br></div><div style="">I am trying to install Exonerate with no luck. I tried to join the Google group but I cannot post (I don't know why) there so I write directly to you. </div><div style=""><br></div><div style="">I used the<a href="https://groups.google.com/forum/?fromgroups=#!searchin/maker-devel/exonerate$20mac/maker-devel/Fjb_23sOm3Q/BpR8c6wYiqYJ" target="_blank"> info in google groups</a> to install Exonerate in my Mac OS 10.6. Everything went fine
(at least it looked like) until the configure step, when I have this error message:</div><div style=""><div>checking for socklen_t... yes</div><div>checking for pkg-config... no</div><div>ERROR: Could not find pkg-config ... is glib-2 installed ???</div><div>macpro:exonerate-2.2.0 admin$ pkg-get</div><div>-bash: pkg-get: command not found</div><div><br></div><div style="">I installed glib 1 and glib 2. But still the thing is not capable to get installed. I don't know what else to do. No way to use maker without exonerate, I guess...</div><div style=""><br></div><div style="">A.</div></div></div></blockquote></div><br><div><span class="Apple-style-span" style="border-collapse:separate; color:rgb(0,0,0); font-family:Helvetica; font-size:medium; font-style:normal; font-variant:normal; font-weight:normal; letter-spacing:normal; line-height:normal; orphans:2; text-align:auto; text-indent:0px; text-transform:none; white-space:normal; widows:2; word-spacing:0px"><div><span class="Apple-style-span" style="font-family:Arial; font-size:12px"><div>Barry Moore</div><div>Research Scientist</div><div>Dept. of Human Genetics</div><div>University of Utah</div><div>Salt Lake City, UT 84112</div><div>--------------------------------------------</div><div>(801) 585-3543</div><div><br class="khtml-block-placeholder"></div></span></div><div><br></div></span><br class="Apple-interchange-newline"></div><br></div></div></div></div></div></div></div></span></body></html>