<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif; "><div>Did you run './Build install' after running '/opt/perl/bin/perl Build.PL ' to overwrite the old scripts? You may have to delete the /maker/bin directory before running './Build install' to guarantee that they are overwritten.</div><div><br></div><div>PS. I'm glad the shebang line could brighten your day. </div><div><br></div><div>Thanks,</div><div>Carson</div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Joanna Kelley <<a href="mailto:jokelley@stanford.edu">jokelley@stanford.edu</a>><br><span style="font-weight:bold">Date: </span> Wednesday, 27 February, 2013 12:53 AM<br><span style="font-weight:bold">To: </span> Carson Holt <<a href="mailto:carsonhh@gmail.com">carsonhh@gmail.com</a>><br><span style="font-weight:bold">Cc: </span> <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> Re: [maker-devel] perl<br></div><div><br></div>Hi Carson, <br><br>First, I just learned the term shebang line, that's awesome! <br>Second, what you said isn't the case, because I ran; <br><br>[jokelley@scg3-ln01 src ]$ /opt/perl/bin/perl Build.PL <br>[jokelley@scg3-ln01 src ]$ grep "/usr/bin/perl" */*<br>
...<br>bin/maker:#!/usr/bin/perl<br>bin/maker2chado:#!/usr/bin/perl <br>bin/maker2eval_gtf:#!/usr/bin/perl <br>bin/maker2jbrowse:#!/usr/bin/perl<br>...<br><br>So it's not using the /opt/perl/bin/perl<br><br>any other ideas for changing that?<br>
Because it's not working. <br><br><div class="gmail_quote">On Tue, Feb 26, 2013 at 5:47 PM, Carson Holt <span dir="ltr"><<a href="mailto:carsonhh@gmail.com" target="_blank">carsonhh@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="font-size:14px;font-family:Calibri,sans-serif;word-wrap:break-word"><div>The shebang line (#!) should use whatever perl was used in the "perl Build.PL" step of the configuration. Then "Build install" will overwrite the existing scripts with the ones using a different perl.</div><div><br></div><div>--Carson</div><div><br></div><div><br></div><span><div style="border-right:medium none;padding-right:0in;padding-left:0in;padding-top:3pt;text-align:left;font-size:11pt;border-bottom:medium none;font-family:Calibri;border-top:#b5c4df 1pt solid;padding-bottom:0in;border-left:medium none"><span style="font-weight:bold">From: </span> Joanna Kelley <<a href="mailto:jokelley@stanford.edu" target="_blank">jokelley@stanford.edu</a>><br><span style="font-weight:bold">Date: </span> Tuesday, 26 February, 2013 5:11 PM<br><span style="font-weight:bold">To: </span> <<a href="mailto:maker-devel@yandell-lab.org" target="_blank">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] perl<br></div><div><div class="h5"><div><br></div>Hello, <br><br>Is there an easy way to change the<br>hard coding of #!/usr/bin/perl<br>to another perl location in the <br>configuration / installation of maker? <br><br>Thanks, <br>Joanna<br><br><br clear="all"><br>-- <br>
Joanna L. Kelley, PhD<br>
Department of Genetics<br>
Stanford School of Medicine<br>
300 Pasteur Drive<br>
Lane Building, Room L-333<br>
Stanford, CA 94305-5120<br><a href="mailto:jokelley@stanford.edu" target="_blank">jokelley@stanford.edu</a><br><br></div></div>
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Stanford School of Medicine<br>
300 Pasteur Drive<br>
Lane Building, Room L-333<br>
Stanford, CA 94305-5120<br><a href="mailto:jokelley@stanford.edu" target="_blank">jokelley@stanford.edu</a><br><br><br><br></span></body></html>