<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif; "><div>Use the last MPICH2 version, as MPICH3 is very different (it's the first attempt to implement the new MPI3 protocol set, and not just a version update). Alternatively you can use OpenMPI. Also use maker version 2.27 instead for MPI.</div><div><br></div><div>Thanks,</div><div>Carson</div><div><br></div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Kenlee Nakasugi <<a href="mailto:kenlee.nakasugi@sydney.edu.au">kenlee.nakasugi@sydney.edu.au</a>><br><span style="font-weight:bold">Date: </span> Sunday, 3 March, 2013 6:44 PM<br><span style="font-weight:bold">To: </span> "<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a> List" <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] regarding mpich<br></div><div><br></div><div>
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Hi, <br><br>
I'm trying to install mpi_maker (Maker 2.1) on a new system (intel ix x86_64) which has mpich v3.0.2 installed, but I can't seem to get maker Build.PL to recognize it. I tried editing the Build.pm file to point to it, but with no success. <br>
All dependencies have been installed and successfully recognized, it is just MPI support that is not. <br><br>
Is there anything I could modify in the install scripts to make it recognize this? Currently, the directly path to where the mpicc and mpiexec are is /apps/mpich/3.0.2/bin<br>
I don't have sys admin rights for the machine, and I'm not sure if this version of mpich was installed for shared libraries as per the GMOD tutorial. But I have previously circumvented this with an earlier version of mpich by modifying the Build.pm module with success. I'm wondering if mpichv3.02 is not compatible? <br><br><br>
Cheers, <br>
Ken<br><br><table cellspacing="0" cellpadding="0" width="100%"><tbody><tr><td><pre>--
Kenlee Nakasugi | Research Fellow
School of Molecular Bioscience
Level 8, SMB Building (G08)| The University of Sydney | NSW | 2006
T: +61 2 9114 1321
E: <a href="mailto:kenlee.nakasugi@sydney.edu.au">kenlee.nakasugi@sydney.edu.au</a></pre></td></tr></tbody></table></div></div>
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