<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif; "><div>Does 'ls -al $home/Dorah/maker-2.27-beta/maker/data/dpp_contig.fasta' show a valid location?</div><div>The error is just saying that the file location as written in the maker_opts.ctl file does not exist.</div><div><br></div><div>--Carson</div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Hud Hud <<a href="mailto:hudarul@yahoo.com">hudarul@yahoo.com</a>><br><span style="font-weight:bold">Reply-To: </span> Hud Hud <<a href="mailto:hudarul@yahoo.com">hudarul@yahoo.com</a>><br><span style="font-weight:bold">Date: </span> Monday, 18 March, 2013 4:13 PM<br><span style="font-weight:bold">To: </span> "<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>" <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] Maker-no such file or directory<br></div><div><br></div><div><div><div style="color:#000; background-color:#fff; font-family:arial, helvetica, sans-serif;font-size:12pt"><div><div style="font-family: arial, helvetica, sans-serif; font-size: 12pt;">I have some problem with maker</div><div style="font-family: arial, helvetica, sans-serif; font-size: 12pt;">1. i try to work with the example data in data directory, but im having this kind of error..anyone can help me</div><div style="font-family: arial, helvetica, sans-serif; font-size: 12pt;"><br></div><div style="font-family: arial, helvetica, sans-serif; font-size: 12pt;"><span style="background-color: rgb(255, 0, 0);">error</span></div><div><div style="background-color: transparent; font-family: arial, helvetica, sans-serif; font-size: 12pt; color: rgb(69, 69, 69);"><font face="arial,helvetica,sans-serif" style="background-color: rgb(255, 255, 0);">$ maker</font></div><div style="background-color: transparent; font-family: arial, helvetica, sans-serif;
font-size: 12pt; color: rgb(69, 69, 69);"><font face="arial,helvetica,sans-serif" style="background-color: rgb(255, 255, 0);">STATUS: Parsing control files...</font></div><div style="background-color: transparent; font-family: arial, helvetica, sans-serif; font-size: 12pt; color: rgb(69, 69, 69);"><font face="arial,helvetica,sans-serif" style="background-color: rgb(255, 255, 0);">dpp_contig.fasta (fasta file or fasta embeded in GFF3 file): No such file or directory at /home/Dorah/maker-2.27-beta/maker/bin/../lib/GI.pm line 186</font></div><div style="background-color: transparent; font-family: arial, helvetica, sans-serif; font-size: 12pt; color: rgb(69, 69, 69);"><font face="arial,helvetica,sans-serif" style="background-color: rgb(255, 255, 0);">--> rank=NA, hostname=NurKaiyisah</font></div><div style="background-color: transparent; font-family: arial, helvetica, sans-serif; font-size: 12pt;"><font face="arial,helvetica,sans-serif" style="background-color: rgb(255, 255, 0);"><br></font></div><div><font face="arial,helvetica,sans-serif" style="background-color: rgb(255, 0, 0);">my maker_opts.ctl</font></div><div style="background-color: transparent;"><font face="arial,helvetica,sans-serif" style="background-color: rgb(255, 255, 0);">genome=$home/Dorah/maker-2.27-beta/maker/data/dpp_contig.fasta</font></div><div style="background-color: transparent;"><font face="arial,helvetica,sans-serif" style="background-color: rgb(255, 255, 0);">est=$home/Dorah/maker-2.27-beta/maker/data/dpp_est.fasta<br></font></div><div style="background-color: transparent;"><font face="arial,helvetica,sans-serif" style="background-color: rgb(255, 255, 0);">protein=$home/Dorah/maker-2.27-beta/maker/data/dpp_protein.fasta<br></font></div></div></div></div></div></div>_______________________________________________
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