<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif; "><div>You can. It will be very slow though as MWAS only dedicates a single cpu per job. So with a 5Mb max per job submission it could take a very long time depending on the size of the assembly (emphasis on very long).</div><div><br></div><div>--Carson</div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Hud Hud <<a href="mailto:hudarul@yahoo.com">hudarul@yahoo.com</a>><br><span style="font-weight:bold">Reply-To: </span> Hud Hud <<a href="mailto:hudarul@yahoo.com">hudarul@yahoo.com</a>><br><span style="font-weight:bold">Date: </span> Tuesday, 19 March, 2013 3:08 PM<br><span style="font-weight:bold">To: </span> "<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>" <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> Re: [maker-devel] Maker-no such file or directory<br></div><div><br></div><div><div><div style="color:#000; background-color:#fff; font-family:arial, helvetica, sans-serif;font-size:12pt"><div><span>Hello everyone</span></div><div style="color: rgb(0, 0, 0); font-size: 16px; font-family: arial, helvetica, sans-serif; background-color: transparent; font-style: normal;">I have some queries, i cant run MAKER locally, so can i use MWAS on my contigs, but since my contigs too long to be run on MWAS, is it possible to combine the results after i upload and run the analysis on my contigs separately...</div><div><br></div> <div style="font-family: arial, helvetica, sans-serif; font-size: 12pt;"> <div style="font-family: 'times new roman', 'new york', times, serif; font-size: 12pt;"> <div dir="ltr"> <font size="2" face="Arial"> <hr size="1"> <b><span style="font-weight:bold;">From:</span></b> Carson Holt <<a href="mailto:carsonhh@gmail.com">carsonhh@gmail.com</a>><br> <b><span style="font-weight: bold;">To:</span></b> Hud Hud <<a href="mailto:hudarul@yahoo.com">hudarul@yahoo.com</a>>;
"<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>" <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>> <br> <b><span style="font-weight: bold;">Sent:</span></b> Tuesday, March 19, 2013 4:44 AM<br> <b><span style="font-weight: bold;">Subject:</span></b> Re: [maker-devel] Maker-no such file or directory<br> </font> </div> <br><div id="yiv973597239"><div><div>Does 'ls -al $home/Dorah/maker-2.27-beta/maker/data/dpp_contig.fasta' show a valid location?</div><div>The error is just saying that the file location as written in the maker_opts.ctl file does not exist.</div><div><br></div><div>--Carson</div><div><br></div><div><br></div><span id="yiv973597239OLK_SRC_BODY_SECTION"><div style="font-family: Calibri; font-size: 11pt; text-align: left; color: black; border-width: 1pt medium medium; border-style: solid none none; padding: 3pt 0in 0in; border-top-color: rgb(181, 196, 223);"><span style="font-weight:bold;">From: </span> Hud Hud <<a rel="nofollow" ymailto="mailto:hudarul@yahoo.com" target="_blank" href="mailto:hudarul@yahoo.com">hudarul@yahoo.com</a>><br><span style="font-weight:bold;">Reply-To: </span> Hud Hud <<a rel="nofollow" ymailto="mailto:hudarul@yahoo.com" target="_blank" href="mailto:hudarul@yahoo.com">hudarul@yahoo.com</a>><br><span style="font-weight:bold;">Date: </span> Monday, 18 March, 2013 4:13 PM<br><span style="font-weight:bold;">To: </span> "<a rel="nofollow" ymailto="mailto:maker-devel@yandell-lab.org" target="_blank" href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>" <<a rel="nofollow" ymailto="mailto:maker-devel@yandell-lab.org" target="_blank" href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold;">Subject: </span> [maker-devel] Maker-no such file or directory<br></div><div><br></div><div><div><div style="color: rgb(0, 0, 0); background-color: rgb(255, 255, 255); font-family: arial, helvetica, sans-serif; font-size: 12pt;"><div><div style="font-family: arial, helvetica, sans-serif; font-size: 12pt;">I have some problem with maker</div><div style="font-family: arial, helvetica, sans-serif; font-size: 12pt;">1. i try to work with the example data in data directory, but im having this kind
of error..anyone can help me</div><div style="font-family: arial, helvetica, sans-serif; font-size: 12pt;"><br></div><div style="font-family: arial, helvetica, sans-serif; font-size: 12pt;"><span style="background-color:rgb(255, 0, 0);">error</span></div><div><div style="background-color: transparent; font-family: arial, helvetica, sans-serif; font-size: 12pt; color: rgb(69, 69, 69);"><font face="arial,helvetica,sans-serif" style="background-color:rgb(255, 255, 0);">$ maker</font></div><div style="background-color: transparent; font-family: arial, helvetica, sans-serif; font-size: 12pt; color: rgb(69, 69, 69);"><font face="arial,helvetica,sans-serif" style="background-color:rgb(255, 255, 0);">STATUS: Parsing control files...</font></div><div style="background-color: transparent; font-family: arial, helvetica, sans-serif; font-size: 12pt; color: rgb(69, 69, 69);"><font face="arial,helvetica,sans-serif" style="background-color:rgb(255, 255,
0);">dpp_contig.fasta (fasta file or fasta embeded in GFF3 file): No such file or directory at /home/Dorah/maker-2.27-beta/maker/bin/../lib/GI.pm line 186</font></div><div style="background-color: transparent; font-family: arial, helvetica, sans-serif; font-size: 12pt; color: rgb(69, 69, 69);"><font face="arial,helvetica,sans-serif" style="background-color:rgb(255, 255, 0);">--> rank=NA, hostname=NurKaiyisah</font></div><div style="background-color: transparent; font-family: arial, helvetica, sans-serif; font-size: 12pt;"><font face="arial,helvetica,sans-serif" style="background-color:rgb(255, 255, 0);"><br></font></div><div><font face="arial,helvetica,sans-serif" style="background-color:rgb(255, 0, 0);">my maker_opts.ctl</font></div><div style="background-color:transparent;"><font face="arial,helvetica,sans-serif" style="background-color:rgb(255, 255, 0);">genome=$home/Dorah/maker-2.27-beta/maker/data/dpp_contig.fasta</font></div><div style="background-color:transparent;"><font face="arial,helvetica,sans-serif" style="background-color:rgb(255, 255, 0);">est=$home/Dorah/maker-2.27-beta/maker/data/dpp_est.fasta<br></font></div><div style="background-color:transparent;"><font face="arial,helvetica,sans-serif" style="background-color:rgb(255, 255, 0);">protein=$home/Dorah/maker-2.27-beta/maker/data/dpp_protein.fasta<br></font></div></div></div></div></div></div>_______________________________________________
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