<div dir="ltr">Hi Carson, <div><br></div><div style>Do you mean standard output from maker? If yes, I need to upload the file to our ftp server, since it is quite big around 1.1 Gb. </div><div style><br></div><div style>Shaohua</div>
</div><div class="gmail_extra"><br><br><div class="gmail_quote">2013/3/25 Carson Holt <span dir="ltr"><<a href="mailto:carsonhh@gmail.com" target="_blank">carsonhh@gmail.com</a>></span><br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="font-size:14px;font-family:Calibri,sans-serif;word-wrap:break-word"><div>Could you send your captured standard error. That would contain messages that highlight the specific cause.</div><div><br></div><div>Thanks,</div>
<div>Carson</div><div><br></div><div><br></div><span><div style="border-right:medium none;padding-right:0in;padding-left:0in;padding-top:3pt;text-align:left;font-size:11pt;border-bottom:medium none;font-family:Calibri;border-top:#b5c4df 1pt solid;padding-bottom:0in;border-left:medium none">
<span style="font-weight:bold">From: </span> "shaohua.fan" <<a href="mailto:lengjingmao@gmail.com" target="_blank">lengjingmao@gmail.com</a>><br><span style="font-weight:bold">Date: </span> Monday, 25 March, 2013 9:49 AM<br>
<span style="font-weight:bold">To: </span> <<a href="mailto:maker-devel@yandell-lab.org" target="_blank">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] maker terminated strangely<br>
</div><div><div class="h5"><div><br></div><div dir="ltr">Hi Maker developers, <div><br></div><div>I met a problem when I was using Maker version 2.27 beta version that the pipeline terminated in the middle of the process without any error message. </div>
<div><br></div><div><br></div><div>The genome I am working with is a Eukaryotic genome which is consisted by around 6000 scaffolds. I combined de novo (Augustus and SNAP) and evidence based (protein from a closely related species and transcriptome from the same species) for the gene prediction (the genome is already repeat masked). The MPI (mpich2 version 1.5) enabled maker was run on a cluster by using SGE. I checked with the administrator of our cluster, there is no limitation of SGE job. </div>
<div><br></div><div>The maker was run by using mpiexec -n 48 /home/shafan/maker/bin/maker maker_opts.ctl maker_bopts.ctl maker_exe.ctl</div><div><br></div><div>I attached my maker_opt.ctl, please let me know if you need any information for this problem. </div>
<div><br></div><div>Thanks a lot!</div><div><br></div><div>Shaohua </div></div></div></div>
_______________________________________________
maker-devel mailing list
<a href="mailto:maker-devel@box290.bluehost.com" target="_blank">maker-devel@box290.bluehost.com</a>
<a href="http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org" target="_blank">http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org</a>
</span></div>
</blockquote></div><br></div>