<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif; "><div>You would have to send me the captured STDERR. MAKER will print out a number of messages whenever it restarts a contig, and will explain why it deletes any files before restarting.</div><div><br></div><div>Thanks,</div><div>Carson</div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Yunfei Guo <<a href="mailto:guoyunfei1989@gmail.com">guoyunfei1989@gmail.com</a>><br><span style="font-weight:bold">Date: </span> Friday, 3 May, 2013 12:33 PM<br><span style="font-weight:bold">To: </span> <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] maker doesn't pick up where it stopped<br></div><div><br></div><div dir="ltr">Dear MAKER community,<div><br></div><div style="">I got a problem that maker doesn't pick up where it stopped last time, rather, it will discard all previous results.</div><div style=""><br></div><div style="">command:</div><div style="">echo 'mpiexec -n 12 maker -q' | qsub -V -cwd -l h_vmem=2g -pe mpich 12<br></div><div style="">maker version:</div><div style="">2.26</div><div style="">mpich version:</div><div style="">1.5rc3</div><div style="">in maker_opts:</div><div style=""><div>clean_try=0 #remove all data from previous run before retrying, 1 = yes, 0 = no</div><div>clean_up=0 #removes theVoid directory with individual analysis files, 1 = yes, 0 = no</div><div><br></div><div style="">
It never happened before. Any advice?</div><div style=""><br></div><div style="">Thank you!</div><div style=""><br></div><div style="">Yunfei</div></div></div>
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