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<p>Dear maker developers,</p>
<p>I am a phD student working on de novo assembly and annotation of a bird genome. I used Maker as annotation pipeline, which ran very well, and I obtained different annotations with evidence from Augustus gene predictor, small EST dataset from my organism and protein sequences from chicken, turkey and zebrafinch. I could combine the different gff files from different scaffolds into one gff file with annotations for the entire genome.</p>
<p>I now have two questions:</p>
<p>1. What could be the reason that I haven't gotten the protein.fasta and trancript.fasta files</p>
<p>2. How can I obtain a consensus gene list of different evidences from maker? What I would actually need is the scaffold, coordinates and annotation (gene name) according to the 3 other bird species.</p> Thank you in advance.
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Best regards,
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Diana Le Duc
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--
<br/>
<br/>Max Planck Institute for Evolutionary Anthropology
<br/>Department of Evolutionary Genetics
<br/>Deutscher Platz 6
<br/>D-04103 Leipzig
<br/>
<br/>Phone +49 (0)341-3550-554
<br/>
<a target="_blank" href="http://www.eva.mpg.de">www.eva.mpg.de</a>
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