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</o:shapelayout></xml><![endif]--></head><body lang=KO link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span lang=EN-US>Hello<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US>I want to check this is bug or my misunderstanding. The following is the gff3 result of maker pipeline. <o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>I think those red marks should be mRNA-2. This type of error was found only at exon<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker mRNA 604856 612126 . + . ID=211342;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2;Parent=211320<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:red'>scaffold_22 maker exon 604856 605185 0.51 + . ID=211343;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-1:exon:2788;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:red'>scaffold_22 maker exon 608362 608456 0.51 + . ID=211344;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-1:exon:2791;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:red'>scaffold_22 maker exon 610193 610286 0.51 + . ID=211345;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-1:exon:2792;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:red'>scaffold_22 maker exon 610583 610714 0.51 + . ID=211346;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-1:exon:2793;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:red'>scaffold_22 maker exon 610838 610942 0.51 + . ID=211347;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-1:exon:2794;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:red'>scaffold_22 maker exon 611458 612126 0.51 + . ID=211348;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-1:exon:2795;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker five_prime_UTR 604856 604972 . + . ID=211349;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2:UTR1;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker CDS 604973 605185 . + 0 ID=211350;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2:cds:2905;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker CDS 608362 608456 . + 0 ID=211351;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2:cds:2906;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker CDS 610193 610286 . + 1 ID=211352;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2:cds:2907;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker CDS 610583 610714 . + 0 ID=211353;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2:cds:2908;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker CDS 610838 610942 . + 0 ID=211354;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2:cds:2909;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker CDS 611458 611661 . + 0 ID=211355;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2:cds:2910;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker three_prime_UTR 611662 612126 . + . ID=211356;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2:UTR2;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker start_codon 604973 604975 . + . ID=211357;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2:start1;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US>scaffold_22 maker stop_codon 611659 611661 . + . ID=211358;Name=maker-scaffold_22-augustus-gene-0.532-mRNA-2:stop2;Parent=211342<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US>Thank you!<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal align=left style='text-align:left'><b><span lang=EN-US>Kang, Yang Jae <o:p></o:p></span></b></p><p class=MsoNormal align=left style='text-align:left'><span lang=EN-US>Ph.D.<o:p></o:p></span></p><p class=MsoNormal align=left style='text-align:left'><span lang=EN-US>Cropgenomics Lab.<o:p></o:p></span></p><p class=MsoNormal align=left style='text-align:left'><span lang=EN-US>College of Agriculture and Life Science<o:p></o:p></span></p><p class=MsoNormal align=left style='text-align:left'><span lang=EN-US>Seoul National University <o:p></o:p></span></p><p class=MsoNormal align=left style='text-align:left'><span lang=EN-US>Korea<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div></body></html>