<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif; "><div>Most likely an issue with your input files format. Try this GFF3 file validator --> <a href="http://modencode.oicr.on.ca/cgi-bin/validate_gff3_online">http://modencode.oicr.on.ca/cgi-bin/validate_gff3_online</a></div><div><br></div><div>Also make sure you are using the most recent version of MAKER.</div><div><br></div><div>--Carson</div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Jingjing Jin <<a href="mailto:jjin01@mail.rockefeller.edu">jjin01@mail.rockefeller.edu</a>><br><span style="font-weight:bold">Date: </span> Sunday, September 1, 2013 4:17 AM<br><span style="font-weight:bold">To: </span> "<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>" <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] error about DBD::SQLite::db<br></div><div><br></div><div dir="ltr"><meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"><style id="owaParaStyle" type="text/css">P {margin-top:0;margin-bottom:0;}</style><div ocsi="0" fpstyle="1"><div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Dear all,<br><br><br>
When I try to run maker on my test dataset, there is an error like this:<br><br>
DBD::SQLite::db do failed: near ",": syntax error at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 1.<br>
DBD::SQLite::db do failed: no such column: JUNC00000001 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 2.<br>
DBD::SQLite::db do failed: no such column: JUNC00000002 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 3.<br>
DBD::SQLite::db do failed: no such column: JUNC00000003 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 4.<br>
DBD::SQLite::db do failed: no such column: JUNC00000004 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 5.<br>
DBD::SQLite::db do failed: no such column: JUNC00000005 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 6.<br>
DBD::SQLite::db do failed: no such column: JUNC00000006 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 7.<br>
DBD::SQLite::db do failed: no such column: JUNC00000007 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 8.<br>
DBD::SQLite::db do failed: no such column: JUNC00000008 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 9.<br>
DBD::SQLite::db do failed: no such column: JUNC00000009 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 10.<br>
DBD::SQLite::db do failed: no such column: JUNC00000010 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 11.<br>
DBD::SQLite::db do failed: no such column: JUNC00000011 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 12.<br>
DBD::SQLite::db do failed: no such column: JUNC00000012 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 13.<br>
DBD::SQLite::db do failed: no such column: JUNC00000013 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 14.<br>
DBD::SQLite::db do failed: no such column: JUNC00000014 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 15.<br>
DBD::SQLite::db do failed: no such column: JUNC00000015 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 16.<br>
DBD::SQLite::db do failed: no such column: JUNC00000016 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 17.<br>
DBD::SQLite::db do failed: no such column: JUNC00000017 at /data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 18.<br><br><br>
The JUN*** is the exteral EST I provide.<br><br>
Can anyone give me some suggestions?<br><br>
Thanks!<br><br>
Jingjing<br><br><br></div></div></div>
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