<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif; "><div>That information is not explicit in GFF3 format. You have to capture all exons parented onto the mRNA, then sort them to identify if the exon is 5-prime, 3-prime, internal, or single exon.</div><div><br></div><div>--Carson</div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Chan Kuang Lim <<a href="mailto:ckuanglim@gmail.com">ckuanglim@gmail.com</a>><br><span style="font-weight:bold">Date: </span> Thursday, September 12, 2013 1:42 AM<br><span style="font-weight:bold">To: </span> <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] Exon Type in MAKER GFF Output<br></div><div><br></div><div dir="ltr"><div><div><div>Dear Maker developers,<br><br></div>I have a question regarding the GFF output of MAKER. When we look at CDS and Exon, we do not know whether they are initial<span class="">, internal, terminal or single. How can we capture the exon type from MAKER output?<br><br></span></div><span class="">Thanks,<br></span></div><span class="">Chan KL<br></span></div>
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