<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif; "><div>MAKER is written in perl, so it can work pretty much anywhere you have perl. It is more an issue of the tools MAKER uses. If you can get SNAP, BLAST, exonerate, etc. to run then MAKER should be no problem.</div><div><br></div><div>You can let MAKER try and install and configure any missing perl libraries as well as external tools for you (this is by far the easiest way). You will need an internet connection.</div><div><br></div><div>cd …/maker/src/</div><div>perl Build.PL #say 'Y' to local installation of libraries and 'N' to MPI for now</div><div>./Build installdeps #grabs missing perl libraries from the ether, and installs them in the .../maker/perl/ directory</div><div>./Build installers #grabs missing tools from the ether, installs, and configures them in the .../maker/exe/ directory</div><div>./Build install #just installs maker</div><div><br></div><div><br></div><div>If you want to run via MPI, I'd recommend OpenMPI, and you will need to rerun the 'perl Build.PL' and './Build install' steps (say yes to MPI this time around).</div><div><br></div><div>Here are some variables you will likly have to add to your .bash_profile to get openmpi to run with MAKER (you must add these and source the profile before attempting to install with OpenMPI), otherwise compilation will not work correctly (OpenMPI shared library issue).</div><div><br></div><div>#you need to set $OMPIHOME to OpenMPI's location here --></div><div>export LD_PRELOAD=$OMPIHOME/lib/libmpi.so:$LD_PRELOAD</div><div><br></div><div><br></div><div>#this one just suppresses a warning --></div><div><div><div>export OMPI_MCA_mpi_warn_on_fork=0</div></div><div><br></div><div><br></div><div>And on some systems you have to add this ' -mca btl ^openib' to the mpiexec command when I run maker.</div><div>Example--></div><div>mpiexec -mca btl ^openib -n 20 maker</div></div><div><br></div><div>Thanks,</div><div>Carson</div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Mark Wisner <<a href="mailto:markwiz@us.ibm.com">markwiz@us.ibm.com</a>><br><span style="font-weight:bold">Date: </span> Wednesday, October 2, 2013 12:52 PM<br><span style="font-weight:bold">To: </span> <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] Maker2 on IBM PowerLinux?<br></div><div><br></div><font size="2" face="sans-serif">IBMs PowerLinux is tuned for Big Data workloads.
We have had queries for Maker2 on PowerLinux.</font><br><font size="2" face="sans-serif">How do we work with Maker2 development
to create a PowerLinux port.</font><br><font size="2" face="sans-serif">Thanks,<br><br>
Mark K. Wisner<br>
Linux On Power ISV PM<br>
IBM<br>
3039 Cornwallis Rd<br>
RTP, NC 27709<br>
Cell 919-649-5813<br></font>_______________________________________________
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