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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi Kerry, What evidence and abinitios did you use when you ran MAKER on your own machine?<br>
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Thanks,<br>
Daniel<br>
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<div class="PlainText">Daniel Ence<br>
Graduate Student<br>
Eccles Institute of Human Genetics<br>
University of Utah<br>
15 North 2030 East, Room 2100<br>
Salt Lake City, UT 84112-5330</div>
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<div style="direction: ltr;" id="divRpF631425"><font color="#000000" size="2" face="Tahoma"><b>From:</b> maker-devel [maker-devel-bounces@yandell-lab.org] on behalf of Gendreau, Kerry L [Kerry_Gendreau@student.uml.edu]<br>
<b>Sent:</b> Friday, November 08, 2013 4:40 PM<br>
<b>To:</b> maker-devel@yandell-lab.org<br>
<b>Subject:</b> [maker-devel] Maker is not predicting any genes on scaffold<br>
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Hello,
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<div>I am attempting to annotate a small section of an arthropod genome. I ran Maker on the command line and the results showed only repetitive regions recognized by Repeat Masker -- no predicted ORFs. I submitted my scaffold through the web interface and got
the same results.</div>
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<div>I know that there are genes present on this scaffold and when I run it through Augustus there are 13 ORFs predicted.</div>
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<div>Are there some options that I need to adjust to get <i>ab initio</i> gene predictions from Maker?</div>
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<div>Thank you,</div>
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<div>Kerry Gendreau</div>
<div>Graduate Student, Dept. of Biological Sciences</div>
<div>University of Massachusetts Lowell</div>
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