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<div>For the installation problem, it shouldn't take more tun few minutes. You might want to just try setting up repeat masker manually, since what is happening is probably system specific.</div>
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<div>The second problem is caused by an edit you made to the maker_opt.ctl file. You deleted the '#' character that separates the options from the instructions comment, so the entire line is being interpreted as an option</div>
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<div>model_org=all select a model organism for RepBase masking in RepeatMasker</div>
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<div>So it's trying to use the phrase 'all select a model organism for RepBase masking in RepeatMasker' as the species, which causes repeat masker to fail.</div>
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<div>Just change the line to model_org=all</div>
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<div>--Carson</div>
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<span style="font-weight:bold">From: </span>Sanea Sheikh <<a href="mailto:saneasheikh@gmail.com">saneasheikh@gmail.com</a>><br>
<span style="font-weight:bold">Date: </span>Thursday, November 7, 2013 8:22 AM<br>
<span style="font-weight:bold">To: </span><<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br>
<span style="font-weight:bold">Subject: </span>Problems with Maker<br>
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<div class="gmail_default" style="font-family:tahoma,sans-serif">Hello</div>
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<div class="gmail_default" style="font-family:tahoma,sans-serif">I am trying to run Maker v2.28 on my computer. I am having two problems. </div>
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When I use ./Build repeatmasker command for installing RepeatMasker, I get stuck at the Configuring RepeatMasker step for days. It doesn't move forward from that point. See the log attached (repeatmasker_maker.txt).</div>
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When I install RepeatMasker and run Maker, I get error message attached in maker_error_RM.txt file.</div>
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<div class="gmail_default" style="font-family:tahoma,sans-serif">Can you please tell me what I am doing wrong here? I have also attached the maker opts.ctl file for your reference. I would really appreciate it if you can help me in this regard. </div>
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<div class="gmail_default" style="font-family:tahoma,sans-serif">Regards</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">Sanea</div>
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