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I have considered using GMOD in the Cloud (we are likely to set something like this up on our local OpenStack when it’s up and running), but as a quick assessment of a test run it seems a bit overkill.
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<div>chris</div>
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<div>On Nov 12, 2013, at 4:03 PM, Barry Moore <<a href="mailto:barry.utah@gmail.com">barry.utah@gmail.com</a>> wrote:</div>
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This is a VERY good point Chris. I think the new web-apollo is developing into a great tool, but there is now a gapping hole in the area of a desktop application (i.e. no server setup) to view/edit genome annotations. I'd love to hear what others are using.
Our group has been using a combination of old Apollo instances, Web-Apollo and Gbrowse.
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<div>B</div>
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<div>On Nov 12, 2013, at 12:18 PM, Fields, Christopher J wrote:</div>
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Are there any recommendations re: visualizing MAKER-generated GFF3? I know it’s currently geared towards Apollo integration, but as everything is moving towards Webapollo, attempts at finding the old local client Apollo code are a bit of an archaeological
expedition (not to mention Apollo has always been a joy to set up from code :). Is everyone still trying to use the old Apollo, since it seems to no longer be supported?<br>
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At the moment I am really thinking of working on simple scripts to make IGV-friendly input (and possibly similar Artemis for our smaller genome projects), but I don’t want to repeat work already in place.<br>
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chris<br>
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<div>Barry Moore</div>
<div>Research Scientist</div>
<div>Dept. of Human Genetics</div>
<div>University of Utah</div>
<div>Salt Lake City, UT 84112</div>
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<div>(801) 585-3543</div>
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