<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Carlos,<div><br></div><div>Did you run ./Build install? If not do that first and then you want to run the copy of maker in ~/software/maker/bin/maker.</div><div><br></div><div>B</div><div><br></div><div><div><div>On Jan 13, 2014, at 1:00 PM, carlos vargas wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"><div dir="ltr">Hello,<div><br></div><div>I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error:</div>
<div><div><br></div><div>Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42.</div>
<div>BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42.</div><div><br></div><div>I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below.</div>
<div><br></div><div><br></div><div>Thank you for your help!</div><div><br></div><div>Carlos</div><div><br></div><div><br></div><div><div>~/software/maker/src$ sudo perl Build.PL</div><div><br></div><div>MAKER supports distributed parallelization via MPI.</div>
<div>Would you like to configure MAKER for MPI (This</div><div>requires that you have an MPI client installed)? [N ]</div><div>N</div><div><br></div><div>Would you like to install the web interface to MAKER (MWAS) on this machine</div>
<div>This requires that you be logged in as root or use sudo for './Build install'? [N ]</div><div>N</div><div>Created MYMETA.yml and MYMETA.json</div><div>Creating new 'Build' script for 'MAKER' version '2.3'</div>
<div><br></div><div><br></div><div>The file 'Build' has been created for you to finish installing MAKER.</div><div><br></div><div><br></div><div>==============================================================================</div>
<div>STATUS MAKER 2.3</div><div>==============================================================================</div><div>PERL Dependencies: VERIFIED</div><div>External Programs: VERIFIED</div><div>External C Libraries: VERIFIED</div>
<div>MPI SUPPORT: DISABLED</div><div>MWAS Web Interface: DISABLED</div><div>MAKER PACKAGE: CONFIGURATION OK</div><div><br></div><div><br></div><div>Important Commands:</div><div> ./Build installdeps #installs missing PERL dependencies</div>
<div> ./Build installexes #installs all missing external programs</div><div> ./Build install #installs MAKER</div><div> ./Build status #Shows this status menu</div><div><br></div>
<div>Other Commands:</div><div> ./Build repeatmasker #installs RepeatMasker (asks for RepBase)</div><div> ./Build blast #installs BLAST (NCBI BLAST+)</div><div> ./Build exonerate #installs Exonerate (v2 on UNIX / v1 on Mac OSX)</div>
<div> ./Build snap #installs SNAP</div><div> ./Build augustus #installs Augustus</div><div> ./Build apollo #installs Apollo</div><div> ./Build gbrowse #installs GBrowse (must be root)</div>
<div> ./Build jbrowse #installs JBrowse (MAKER copy, not web accecible)</div><div> ./Build webapollo #installs WebApollo (use maker2wap to create DBs)</div><div> ./Build mpich2 #installs MPICH2 (but manual install recommended)</div>
<div><br></div><div>~/software/maker/src$ sudo ./Build install</div><div>Building MAKER</div><div>Installing MAKER...</div><div>Building MAKER</div><div>Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm</div>
<div><br></div><div>~/software/maker/src$ maker -h</div><div>Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42.</div>
<div>BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42.</div><div><br></div></div><div><br></div></div></div>
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