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<body class='hmmessage'><div dir='ltr'><font face="Arial">Hello Dan,</font><div><font face="Arial"><br></font></div><div><font face="Arial">The sample is a Prokaryotic genome, assembly size is greater than 6Mbp (rules out Web-Maker)</font></div><div><font face="Arial"><br></font></div><div><font face="Arial">Maker 2.30 is beta release hence did not try it out, will do that now.</font></div><div><font face="Arial"><br></font></div><div><font face="Arial">I have installed Maker before and its not a trivial task, hence the question about Virtual Machine.</font></div><div><font face="Arial"><br></font></div><div><font face="Arial">Since I am already struggling with installing Prokka and DIYA.</font></div><div><font face="Arial"><br></font></div><div><font face="Arial">If a virtual machine is available it would save ~ 3 days time, otherwise I will install from bottom up!</font></div><div><br></div><div><span style="font-family: Arial; font-size: 12pt;"><br></span></div><div><span style="font-family: Arial; font-size: 12pt;">Regards,</span></div><div><font face="Arial">--</font></div><div><div style="orphans: 2; widows: 2;"><font face="Arial">Prakhar Gaur</font></div><div style="orphans: 2; widows: 2;"><font face="Arial">Senior Research Fellow</font></div><div style="orphans: 2; widows: 2;"><font face="Arial">Microbiology @ Indian Agriculture Research Institute</font></div><div style="orphans: 2; widows: 2;"><font face="Arial">New Delhi, IN.</font></div></div><div><br></div><div><br><br><div><hr id="stopSpelling">From: ddvanderpool@gmail.com<br>Subject: Re: [maker-devel] Maker Virtual Machine Image<br>Date: Wed, 15 Jan 2014 23:17:30 -0700<br>To: prakhar_aaidu16@hotmail.com<br><br>Hello Prakhar,<div><br></div><div>Is there a reason you have not tried installing 2.30? I have it running on Debian 7 and it was fairly straight forward. Additionally, the multithreading speeds everything up so that I can annotate several smaller eukaryote genomes in one day.</div><div><br></div><div>which dependencies and libraries are the problem? </div><div><br><div>
<span class="ecxApple-style-span" style="border-collapse:separate;color:rgb(0, 0, 0);font-family:Helvetica;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;orphans:2;text-align:-webkit-auto;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;font-size:medium;"><span class="ecxApple-style-span" style="border-collapse:separate;color:rgb(0, 0, 0);font-family:Helvetica;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;orphans:2;text-align:-webkit-auto;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;font-size:medium;"><div style="word-wrap:break-word;"><span class="ecxApple-style-span" style="border-collapse:separate;color:rgb(0, 0, 0);font-family:Helvetica;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;orphans:2;text-align:-webkit-auto;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;font-size:medium;"><div style="word-wrap:break-word;"><span class="ecxApple-style-span" style="border-collapse:separate;color:rgb(0, 0, 0);font-family:Helvetica;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;orphans:2;text-align:-webkit-auto;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;font-size:medium;"><div style="word-wrap:break-word;"><span class="ecxApple-style-span" style="border-collapse:separate;color:rgb(0, 0, 0);font-family:Helvetica;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;orphans:2;text-align:-webkit-auto;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;font-size:medium;"><div style="word-wrap:break-word;"><span class="ecxApple-style-span" style="border-collapse:separate;color:rgb(0, 0, 0);font-family:Helvetica;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;orphans:2;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;font-size:medium;"><div style="word-wrap:break-word;"><div>Dan Vanderpool</div><div>University of Montana</div><div>McCutcheon Lab</div><div>Health Sciences 304</div><div>Missoula, MT 59812</div><div>Office: 406-243-6106</div><div><a href="mailto:ddvanderpool@gmail.com">ddvanderpool@gmail.com</a></div><div><br></div></div></span><br class="ecxApple-interchange-newline"></div></span><br class="ecxApple-interchange-newline"></div></span><br class="ecxApple-interchange-newline"></div></span><br class="ecxApple-interchange-newline"></div></span><br class="ecxApple-interchange-newline"></span><br class="ecxApple-interchange-newline">
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<br><div><div>On Jan 15, 2014, at 11:12 PM, PRAKHAR gaur wrote:</div><br class="ecxApple-interchange-newline"><blockquote><span class="ecxApple-style-span" style="border-collapse:separate;font-family:Helvetica;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;orphans:2;text-align:-webkit-auto;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;font-size:medium;"><div class="ecxhmmessage" style="font-size:12pt;font-family:Calibri;"><div dir="ltr">Hello,<div><br></div><div>I am having multiple dependency related and library version issues installing Maker 2.28 on Debian 7</div><div><br></div><div>So would like to ask if there is a easy way out?</div><div><span style="font-size:12pt;">Is there a vm image with Maker available for download from somewhere?</span></div><div><br></div><div>I know about the AWS ami used for 2103 GMOD Maker Tutorial, <b style="font-family:'Helvetica Neue', Helvetica, Roboto, Arial, sans-serif;font-size:13px;line-height:19.046875px;">ami-ea661f83.</b></div><div><b style="font-family:'Helvetica Neue', Helvetica, Roboto, Arial, sans-serif;font-size:13px;line-height:19.046875px;"><br></b></div><div>But wanted to use the vm locally, which is not possible with AWS ami's.</div><div><br></div><div>Any help / pointer in right direction is appreciated.</div><div><br></div><div>Regards,</div><div>--</div><div>Prakhar Gaur</div><div>Senior Research Fellow</div><div>Microbiology @ Indian Agriculture Research Institute</div><div>New Delhi, IN.</div></div>_______________________________________________<br>maker-devel mailing list<br><a href="mailto:maker-devel@box290.bluehost.com">maker-devel@box290.bluehost.com</a><br><a href="http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org" target="_blank">http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org</a><br></div></span></blockquote></div><br></div></div></div> </div></body>
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