<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;"><div>What are the errors from the STDERR printed to screen? That will tell you the specifics of why it is failing. Redirect to a file to capture it and I can take a look as well. Note you may need to set a higher number of retries to get it to run again.</div><div><br></div><div>Thanks,</div><div>Carson</div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> "Schmidt, Sarah" <<a href="mailto:S.M.Schmidt@uva.nl">S.M.Schmidt@uva.nl</a>><br><span style="font-weight:bold">Date: </span> Thursday, January 30, 2014 at 7:30 AM<br><span style="font-weight:bold">To: </span> "<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>" <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] Maker fails to annotate large contigs<br></div><div><br></div><div><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">
Dear Carson,
<div><br></div><div>When running maker on my genome assembly (roughly 60 Mb), it keeps failing the largest contigs with either error:</div><div><br></div><div>DIED RANK 3:4:0:3</div><div>DIED COUNT 2</div><div><br></div><div>or </div><div><br></div><div>DIED RANK 4:4:0:0</div><div>DIED COUNT 1</div><div>DIED RANK 4</div><div>DIED COUNT 1.</div><div><br></div><div>Do you know what might be the problem?</div><div><br></div><div>I am using Maker 2.28 with MPI support.</div><div><br></div><div>Thanks in advance,</div><div><br></div><div>Sarah</div><div><div><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><br class="Apple-interchange-newline"><br></div></div></div></span></span></div></div></div></div>
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