<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;"><div>The only time I have seen this is when fgenesh is used as a predictor and correct_est_fusion=1 is set (it was a bug in trimming long UTR's on fgenesh models). Is that how you have your job configured? If so, that particular bug is fixed in the current MAKER release.</div><div><br></div><div>Thanks,</div><div>Carson</div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> "Robert King (RRes-Roth)" <<a href="mailto:robert.king@rothamsted.ac.uk">robert.king@rothamsted.ac.uk</a>><br><span style="font-weight:bold">Date: </span> Wednesday, April 16, 2014 at 5:27 AM<br><span style="font-weight:bold">To: </span> "<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>" <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] scalar text in maker transcripts<br></div><div><br></div><div xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:x="urn:schemas-microsoft-com:office:excel" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40"><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"><meta name="Generator" content="Microsoft Word 14 (filtered medium)"><style><!--
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</o:shapelayout></xml><![endif]--><div lang="EN-GB" link="blue" vlink="purple"><div class="WordSection1"><p class="MsoNormal">Hi,<o:p></o:p></p><p class="MsoNormal"><o:p> </o:p></p><p class="MsoNormal">I’ve got some strange characters in my maker transcripts (I used keep predictions). I opened the file in wordpad<o:p></o:p></p><p class="MsoNormal" style="text-autospace:none"><span style="font-family: 'Courier New';">ACTTCGACATTCTCCGTCACCAATTCAATCACCCCACACGAACAACCATCGGAGCCTCCC<o:p></o:p></span></p><p class="MsoNormal" style="text-autospace:none"><span style="font-family: 'Courier New';">AGAACTCGCATTACCGACTTCAAGATGTCSCALAR(0xf5397d8)SCALAR(0xc4cad<o:p></o:p></span></p><p class="MsoNormal"><span style="font-family: 'Courier New';">88)CTTCTTTCTACGGCGCTGGCCGCAAGGTCCTCGGCTACAACTCTTACTTCGGAAACT<o:p></o:p></span></p><p class="MsoNormal"><span style="font-family: 'Courier New';"><o:p> </o:p></span></p><p class="MsoNormal"><span style="font-family: 'Courier New';">Any ideas what may cause this?
<o:p></o:p></span></p><p class="MsoNormal"><span style="font-family: 'Courier New';">Thanks<o:p></o:p></span></p><p class="MsoNormal"><span style="font-family: 'Courier New';">Rob<o:p></o:p></span></p></div><br>--
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