<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;"><div>I've never seen this. What version of MAKER are you using?</div><div><br></div><div>--Carson</div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Michael Seidl <<a href="mailto:michael.seidl@wur.nl">michael.seidl@wur.nl</a>><br><span style="font-weight:bold">Date: </span> Tuesday, April 22, 2014 at 8:27 AM<br><span style="font-weight:bold">To: </span> <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] thousands of array-refs in merged .gff after 'gff3_merge'<br></div><div><br></div><div dir="ltr"><div>Hi,<br><br></div>I have a question on the post-processing of my maker output. I finished a maker run on a draft genome (231 scaffolds) without an error. To get a merged gff3 I run ~/local_progs/maker/bin/gff3_merge -d master_datastore_index.log. However, I realized that I contains next to gff3 conform output, thousands of lines of array refs, e.g. ARRAY(0x188a8578)). The total number of produced scaffolds is correct, however I have my doubts if I successfully retrieved all annotations...Could you maybe point me to a possible solution...<br><br>Thanks in advance<br>Michael<br><br></div>
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