<div dir="ltr"><div>Hi Carson,<br><br>I am using maker 2.31.<br><br></div>Thanks<br>Michael<br><div> </div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Apr 22, 2014 at 4:31 PM, Carson Holt <span dir="ltr"><<a href="mailto:carsonhh@gmail.com" target="_blank">carsonhh@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">I've never seen this. What version of MAKER are you using?<br>
<br>
--Carson<br>
<br>
From: Michael Seidl <<a href="mailto:michael.seidl@wur.nl">michael.seidl@wur.nl</a><mailto:<a href="mailto:michael.seidl@wur.nl">michael.seidl@wur.nl</a>>><br>
Date: Tuesday, April 22, 2014 at 8:27 AM<br>
To: <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a><mailto:<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>>><br>
Subject: [maker-devel] thousands of array-refs in merged .gff after 'gff3_merge'<br>
<div><div class="h5"><br>
Hi,<br>
<br>
I have a question on the post-processing of my maker output. I finished a maker run on a draft genome (231 scaffolds) without an error. To get a merged gff3 I run ~/local_progs/maker/bin/gff3_merge -d master_datastore_index.log. However, I realized that I contains next to gff3 conform output, thousands of lines of array refs, e.g. ARRAY(0x188a8578)). The total number of produced scaffolds is correct, however I have my doubts if I successfully retrieved all annotations...Could you maybe point me to a possible solution...<br>
<br>
Thanks in advance<br>
Michael<br>
<br>
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<br>
</blockquote></div><br><br clear="all"><br>-- <br><div dir="ltr"><b style="font-size:8px"><font color="#808080"><font face="verdana,sans-serif"><span style="font-size:10px">Michael F Seidl, PhD</span></font></font></b><div>
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