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Hi Panos, So I just tried the commands that you used on my install of maker, and it took a surprisingly long time for the error messages to print. The test that we use in the tutorials (it seems to run faster than running maker with -h or with no options) is
maker -CTL, which will create control files that you use to set the many options for maker.
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<div>Try running ./maker -CTL and let me know whether it creates those files. I guess that it might take more or less time, depending on your machine. </div>
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<div>~Daniel</div>
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<div><span style="font-family: Tahoma; font-size: small; ">Daniel Ence</span></div>
<div><span style="font-family: Tahoma; font-size: small; ">Graduate Student</span></div>
<div><a href="mailto:dence@genetics.utah.edu">dence@genetics.utah.edu</a><br style="font-family: Tahoma; font-size: small; ">
<span style="font-family: Tahoma; font-size: small; ">Eccles Institute of Human Genetics</span><br style="font-family: Tahoma; font-size: small; ">
<span style="font-family: Tahoma; font-size: small; ">University of Utah</span><br style="font-family: Tahoma; font-size: small; ">
<span style="font-family: Tahoma; font-size: small; ">15 North 2030 East, Room 2100</span><br style="font-family: Tahoma; font-size: small; ">
<span style="font-family: Tahoma; font-size: small; ">Salt Lake City, UT 84112-5330</span></div>
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<div>On May 28, 2014, at 7:46 AM, Panos Ioannidis <<a href="mailto:panos.ioannidis@gmail.com">panos.ioannidis@gmail.com</a>></div>
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<div dir="ltr">Hi Daniel,<br>
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Here's the output of <span style="font-family:courier new,monospace">./Build status</span><br>
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<span style="font-family:courier new,monospace">==============================================================================<br>
STATUS MAKER v2.31.4<br>
==============================================================================<br>
PERL Dependencies: VERIFIED<br>
External Programs: VERIFIED<br>
External C Libraries: VERIFIED<br>
MPI SUPPORT: DISABLED<br>
MWAS Web Interface: DISABLED<br>
MAKER PACKAGE: CONFIGURATION OK<br>
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<div><span style="font-family:courier new,monospace"><span style="font-family:arial,helvetica,sans-serif">I think everything looks okay, right?</span><br>
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<div class="gmail_quote">On Wed, May 28, 2014 at 3:29 PM, Daniel Ence <span dir="ltr">
<<a href="mailto:dence@genetics.utah.edu" target="_blank">dence@genetics.utah.edu</a>></span> wrote:<br>
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<div style="word-wrap:break-word">Hi Panos, When you go to the src directory and type "./Build status", what message do you get? Also, what version of maker are you running?
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<div>Thanks,</div>
<div>Daniel</div>
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<div><span style="font-family:Tahoma;font-size:small">Daniel Ence</span></div>
<div><span style="font-family:Tahoma;font-size:small">Graduate Student</span></div>
<div><a href="mailto:dence@genetics.utah.edu" target="_blank">dence@genetics.utah.edu</a><br style="font-family:Tahoma;font-size:small">
<span style="font-family:Tahoma;font-size:small">Eccles Institute of Human Genetics</span><br style="font-family:Tahoma;font-size:small">
<span style="font-family:Tahoma;font-size:small">University of Utah</span><br style="font-family:Tahoma;font-size:small">
<span style="font-family:Tahoma;font-size:small">15 North 2030 East, Room 2100</span><br style="font-family:Tahoma;font-size:small">
<span style="font-family:Tahoma;font-size:small">Salt Lake City, UT 84112-5330</span></div>
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<div>On May 28, 2014, at 1:28 AM, Panos Ioannidis <<a href="mailto:panos.ioannidis@gmail.com" target="_blank">panos.ioannidis@gmail.com</a>></div>
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<div>Hello Maker community,<br>
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I just finished installing Maker and even though everything seems to be okay, when I give<br>
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<span style="font-family:courier new,monospace">./maker -h</span><br>
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or<br>
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<span style="font-family:courier new,monospace">./maker</span><br>
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the program apparently hangs without giving any output or warning or error.<br>
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Just so you know, I have installed all dependencies (Perl libraries and third-party programs) and am executing from
<span style="font-family:courier new,monospace">bin/</span>, not <span style="font-family:courier new,monospace">
src/bin/</span>.<br>
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Any ideas?<br>
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Panos<br>
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