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Yes, I think that's why the ids get changed.<br>
But I don't know which predictions I want to keep as I'm using maker
to only keep the ones that are not equivalent to the models that are
in the model_gff.<br>
<br>
Anthony<br>
<br>
<div class="moz-cite-prefix">On 12/06/2014 17:50, Daniel Ence wrote:<br>
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Hi Anthony, So I think that the gene ID gets changed in the
process of promoting things from pred_gff to gene models. If you
know which predictions you want to keep, then you can select those
out and pass them to model_gff.
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<div>~Daniel</div>
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<div apple-content-edited="true">
<div><span style="font-family: Tahoma; font-size: small; ">Daniel
Ence</span></div>
<div><span style="font-family: Tahoma; font-size: small; ">Graduate
Student</span></div>
<div><a moz-do-not-send="true"
href="mailto:dence@genetics.utah.edu">dence@genetics.utah.edu</a><br
style="font-family: Tahoma; font-size: small; ">
<span style="font-family: Tahoma; font-size: small; ">Eccles
Institute of Human Genetics</span><br style="font-family:
Tahoma; font-size: small; ">
<span style="font-family: Tahoma; font-size: small; ">University
of Utah</span><br style="font-family: Tahoma; font-size:
small; ">
<span style="font-family: Tahoma; font-size: small; ">15
North 2030 East, Room 2100</span><br style="font-family:
Tahoma; font-size: small; ">
<span style="font-family: Tahoma; font-size: small; ">Salt
Lake City, UT 84112-5330</span></div>
</div>
<br>
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<div>On Jun 12, 2014, at 7:00 AM, Anthony Bretaudeau <<a
moz-do-not-send="true"
href="mailto:anthony.bretaudeau@rennes.inra.fr">anthony.bretaudeau@rennes.inra.fr</a>></div>
<div> wrote:</div>
<br class="Apple-interchange-newline">
<blockquote type="cite"><span style="font-family: Helvetica;
font-size: medium; font-style: normal; font-variant:
normal; font-weight: normal; letter-spacing: normal;
line-height: normal; orphans: 2; text-align: -webkit-auto;
text-indent: 0px; text-transform: none; white-space:
normal; widows: 2; word-spacing: 0px;
-webkit-text-size-adjust: auto; -webkit-text-stroke-width:
0px; display: inline !important; float: none; ">A little
question which is related: I set the map_forward option to
1, but it seems to work only for the model_gff gff. Is
there a way to make it keep the original IDs also for the
pred_gff file?</span><br style="font-family: Helvetica;
font-size: medium; font-style: normal; font-variant:
normal; font-weight: normal; letter-spacing: normal;
line-height: normal; orphans: 2; text-align: -webkit-auto;
text-indent: 0px; text-transform: none; white-space:
normal; widows: 2; word-spacing: 0px;
-webkit-text-size-adjust: auto; -webkit-text-stroke-width:
0px; ">
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