<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;"><div>Sorry for the slow reply. I was on vacation all last week. Do you have the full STDERR? sometimes the last error is irrelevant and it's just the result of a failure further upstream. Also are you running 20 independent maker jobs simultaneously?</div><div><br></div><div>--Carson</div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Jan Philip Oeyen <<a href="mailto:jp.oeyen@uni-bonn.de">jp.oeyen@uni-bonn.de</a>><br><span style="font-weight:bold">Date: </span> Monday, July 28, 2014 at 6:22 AM<br><span style="font-weight:bold">To: </span> <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] Forks.pm error when running maker with dsindex<br></div><div><br></div><div dir="ltr"><div>Hi all,<br></div>we are currently having some unexpected errors when running maker on a genome which is split in several parts. Our cluster admin reported the following error message:<br><br>Argument "ALRM" isn't numeric in exit at /share/scientific_bin/perlmodu<div id=":2uq" class="">
les/lib/site_perl/5.14.2/x86_64-linux-thread-multi/<a href="http://forks.pm" target="_blank">forks.pm</a> line 2188.<br>
SIGTERM received<br>
SIGTERM received<br>
SIGTERM received</div><br><div><div>We were using maker with the '-g' option on a single genome which is split into 20 parts, where 19 parts are equally large and the last contains about 20 sequences more. After that we ran Maker using dsindex to clean up the output. We are currently using maker v2.31 on 4 threads and forks v0.34.<br><br></div><div>If any further info is needed to clarify the problem, please let me know and I will provide as much as possible. <br><br></div><div>Thank you for your help!<br><br></div><div>Best regards,<br></div><div>Jan Philip Oeyen<br></div><div>ZFMK // ZMB // University of Bonn<br></div></div></div>
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