<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;"><div>Either you speciied TMP= in your maker_opts.ctl file to be an NFS mounted directory (must be locally mounted), the drive containing directory specified by TMP= (defaults to /tmp) is full or nearly full, your input file is not proper fasta format, or you are using an out of date version of BioPerl.</div><div><br></div><div>Try the first three in the list then look at BioPerl. The BioPerl version should be printed as part of the the debug output.</div><div><br></div><div>--Carson</div><div><br></div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Kevin Tsai <<a href="mailto:kevintsai@iis.sinica.edu.tw">kevintsai@iis.sinica.edu.tw</a>><br><span style="font-weight:bold">Date: </span> Tuesday, August 5, 2014 at 4:59 AM<br><span style="font-weight:bold">To: </span> <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br><span style="font-weight:bold">Subject: </span> [maker-devel] Early obstacle with SplitDB<br></div><div><br></div><div dir="ltr">Hello,<div>I'm a new user to Maker so I suspect this will be a simple question, but I am having trouble finding documentation on SplitDB. Our IT admin set up the application and I'm running into the following issue about 30 seconds after kickoff. Below is the debugged output:</div><div><br></div><div><div>STATUS: Parsing control files...</div><div>Calling GI::load_control_files at /usr/bin/maker line 452.</div><div>Calling GI::new_instance_temp at /usr/bin/maker line 463.</div><div>Calling GI::mount_check at /usr/bin/maker line 465.</div><div>Calling GI::set_global_temp at /usr/bin/maker line 483.</div><div>STATUS: Processing and indexing input FASTA files...</div><div>Calling GI::s_abs_path at /usr/bin/maker line 519.</div><div>Calling GI::s_abs_path at /usr/bin/maker line 519.</div><div>Calling GI::s_abs_path at /usr/bin/maker line 519.</div><div>Calling GI::s_abs_path at /usr/bin/maker line 519.</div><div>Calling GI::s_abs_path at /usr/bin/maker line 519.</div><div>Calling List::Util::shuffle at /usr/bin/maker line 529.</div><div>Calling GI::split_db at /usr/bin/maker line 536.</div><div>Calling File::Path::rmtree at /usr/bin/maker line 537.</div><div>Calling Iterator::Any::new at /usr/bin/maker line 537.</div><div>Calling Iterator::Any::nextDef at /usr/bin/maker line 537.</div><div>Calling Iterator::Any::new at /usr/bin/maker line 537.</div><div>Calling mkdir at /usr/bin/maker line 537.</div><div>Calling Iterator::Any::nextFastaRef at /usr/bin/maker line 537.</div><div>Calling system at /usr/bin/maker line 537.</div><div>ERROR: SplitDB not created correctly</div><div><br></div><div> at /usr/local/share/perl5/GI.pm line 1144.</div><div> GI::split_db("/home/keceltes/maker2/final.fasta", "nucleotide", 1, "/home/keceltes/maker2/final.maker.output/mpi_blastdb", "C") called at /usr/bin/maker line 537</div><div>--> rank=NA, hostname=Za2.cglab</div><div><br></div><div>Any suggestions? Thank you in advance!</div>-- <br><div dir="ltr"><div><span><b><font color="#000000">Kevin Tsai</font></b></span></div><span><a href="http://www.linkedin.com/in/kevinjtsai/" title="View public profile" name="SafeHtmlFilter_1445e6e553118db9_webProfileURL" style="color:rgb(17,85,204)" target="_blank">www.linkedin.com/in/kevinjtsai/</a><br><div><font color="#000000">Ph.D. Candidate, Bioinformatics</font></div><div><font color="#000000">Institute of Information Science, Academia Sinica</font></div></span></div></div></div>
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