<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;">
<div>
<div>Dear Maker Developers,</div>
<div><br>
</div>
<div>One of my Maker users is observing the following error when running maker on our systems:</div>
<div><br>
</div>
<div>------------- EXCEPTION: Bio::Root::BadParameter -------------</div>
<div>MSG: ' 9.1' is not a valid score</div>
<div>VALUE: 9.1</div>
<div>STACK: Error::throw</div>
<div>STACK: Bio::Root::Root::throw /tgac/software/testing/perl_activeperl/5.18.2.1802/x86_64/site/lib/Bio/Root/Root.pm:449</div>
<div>STACK: Bio::SeqFeature::Generic::score /tgac/software/testing/perl_activeperl/5.18.2.1802/x86_64/site/lib/Bio/SeqFeature/Generic.pm:468</div>
<div>STACK: GFFDB::_ary_to_features /tgac/software/testing/maker/2.31.6/x86_64/bin/../lib/GFFDB.pm:891</div>
<div>STACK: GFFDB::phathits_on_chunk /tgac/software/testing/maker/2.31.6/x86_64/bin/../lib/GFFDB.pm:534</div>
<div>STACK: Process::MpiChunk::_go /tgac/software/testing/maker/2.31.6/x86_64/bin/../lib/Process/MpiChunk.pm:756</div>
<div>STACK: Process::MpiChunk::run /tgac/software/testing/maker/2.31.6/x86_64/bin/../lib/Process/MpiChunk.pm:341</div>
<div>STACK: Process::MpiChunk::run_all /tgac/software/testing/maker/2.31.6/x86_64/bin/../lib/Process/MpiChunk.pm:357</div>
<div>STACK: Process::MpiTiers::run_all /tgac/software/testing/maker/2.31.6/x86_64/bin/../lib/Process/MpiTiers.pm:287</div>
<div>STACK: Process::MpiTiers::run_all /tgac/software/testing/maker/2.31.6/x86_64/bin/../lib/Process/MpiTiers.pm:287</div>
<div>STACK: /tgac/software/testing/bin/core/../..//maker/2.31.6/x86_64/bin/maker:686</div>
<div>
<div>--------------------------------------------------------------</div>
<div>--> rank=NA, hostname=UV00000010-P002</div>
<div>ERROR: Failed while doing repeat masking</div>
</div>
<div><br>
</div>
<div>When the user runs with the '-RM_off' option, everything is fine but fails with the above error when not applying that option. I was just wondering if anyone had any insight into what might be causing this?</div>
<div><br>
</div>
<div>Regards,</div>
<div><br>
</div>
<div>Tim.</div>
</div>
<div>
<p style="font-size: 12px; margin: 0px; font-family: Verdana;">---</p>
<p style="margin: 0px; font-family: Verdana;"><span style="font-size: 10px;"><b>Timothy Stitt PhD</b> / Head of Scientific Computing</span></p>
<p style="margin: 0px; font-family: Verdana;"><span style="font-size: 10px;">The Genome Analysis Centre (TGAC)</span></p>
<p style="margin: 0px; font-family: Verdana; color: rgb(4, 46, 238);"><span style="text-decoration: underline; font-size: 10px;"><a href="http://www.tgac.ac.uk/">http://www.tgac.ac.uk/</a></span></p>
<p style="margin: 0px; font-family: Cambria; min-height: 19px;"><span style="font-size: 10px;"><br>
</span></p>
<p style="margin: 0px; font-family: Verdana;"><span style="font-size: 10px;">p: +44 1603 450378</span></p>
<p style="margin: 0px; font-family: Verdana; color: rgb(13, 102, 213);"><span style="color: rgb(0, 0, 0); font-size: 10px;">e: <a href="mailto:timothy.stitt@tgac.ac.uk">timothy.stitt@tgac.ac.uk</a></span></p>
</div>
</body>
</html>