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<p>Attaching the error file. There are a number of errors reported about the fasta file, but I see these errors for the other scaffolds too, so I thought these errors might not be the reason..</p>

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<p>Thanks,</p>

<p>Ranjani</p>

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<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>From:</b> Carson Holt <carsonhh@gmail.com><br>

<b>Sent:</b> Thursday, October 23, 2014 3:20 PM<br>

<b>To:</b> Sivaranjani Namasivayam<br>

<b>Cc:</b> maker-devel@yandell-lab.org<br>

<b>Subject:</b> Re: [maker-devel] MAKER error Failed while polishing proteins</font>

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<div>The causal error will be further up the error log. You may just want to send your capture STDERR file.

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<div class="">—Carson</div>

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<div class="">On Oct 23, 2014, at 1:05 PM, Sivaranjani Namasivayam <<a href="mailto:ranjani@uga.edu" class="">ranjani@uga.edu</a>> wrote:</div>

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Hi,</div>

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I get this error when I run MAKER</div>

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ERROR: Failed while polishing proteins<br class="">

ERROR: Chunk failed at level:10, tier_type:3<br class="">

FAILED CONTIG:scaffold00006<br class="">

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ERROR: Chunk failed at level:4, tier_type:0<br class="">

FAILED CONTIG:scaffold00006</div>

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Other scaffolds run fine, but this scaffold keeps failing. Would it mean something is wrong with the proteins in this scaffold?</div>

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Thanks,</div>

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Ranjani<br class="">

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