<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class="">It’s caused by one of the characters in your GFF3 file. For example characters NOT in the set [a-zA-Z0-9.:^*$@!+_?-|] must be escaped in GFF3 with exceptions outlined in the format spec. You mayhave either a ‘ or a “ that must be escaped.</div><div class=""><br class=""></div><div class="">—Carson</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><br class=""><div><blockquote type="cite" class=""><div class="">On Nov 8, 2014, at 6:58 AM, Timothy Stitt (TGAC) <<a href="mailto:Timothy.Stitt@tgac.ac.uk" class="">Timothy.Stitt@tgac.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><div class="">
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<div class="">Dear Maker Support,</div>
<div class=""><br class="">
</div>
<div class="">I'm running Maker v2.31.7 and I'm receiving lots of the following warnings/errors during the run. The errors don't seem to prevent the calculation from completing so I was just wondering how I can avoid getting them?</div>
<div class=""><br class="">
</div>
<div class=""><snip></div>
<div class="">
<div class="">STATUS: Setting up database for any GFF3 input...</div>
<div class="">DBD::SQLite::db do failed: near ",": syntax error at /usr/users/TGAC_ga007/stittt/Software/MAKER/UV/2.31.7/bin/../lib/GFFDB.pm line 496, <$IN> line 1.</div>
<div class="">DBD::SQLite::db do failed: near ",": syntax error at /usr/users/TGAC_ga007/stittt/Software/MAKER/UV/2.31.7/bin/../lib/GFFDB.pm line 496, <$IN> line 2.</div>
<div class="">DBD::SQLite::db do failed: near ",": syntax error at /usr/users/TGAC_ga007/stittt/Software/MAKER/UV/2.31.7/bin/../lib/GFFDB.pm line 496, <$IN> line 3.</div>
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<div class="">…</div>
<div class=""></snip></div>
<div class=""><br class="">
</div>
<div class="">Thanks in advance,</div>
<div class=""><br class="">
</div>
<div class="">Tim.</div>
<div class=""><div style="font-size: 12px; margin: 0px; font-family: Verdana;" class="">---</div><div style="margin: 0px; font-family: Verdana;" class=""><span style="font-size: 10px;" class=""><b class="">Timothy Stitt PhD</b> / Head of Scientific Computing</span></div><div style="margin: 0px; font-family: Verdana;" class=""><span style="font-size: 10px;" class="">The Genome Analysis Centre (TGAC)</span></div><div style="margin: 0px; font-family: Verdana; color: rgb(4, 46, 238);" class=""><span style="text-decoration: underline; font-size: 10px;" class=""><a href="http://www.tgac.ac.uk/" class="">http://www.tgac.ac.uk/</a></span></div><div style="margin: 0px; font-family: Cambria; min-height: 19px;" class=""><span style="font-size: 10px;" class=""><br class="">
</span></div><div style="margin: 0px; font-family: Verdana;" class=""><span style="font-size: 10px;" class="">p: +44 1603 450378</span></div><div style="margin: 0px; font-family: Verdana; color: rgb(13, 102, 213);" class=""><span style="font-size: 10px;" class="">e: <a href="mailto:timothy.stitt@tgac.ac.uk" class="">timothy.stitt@tgac.ac.uk</a></span></div>
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