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</o:shapelayout></xml><![endif]--></head><body lang=EN-US link="#0563C1" vlink="#954F72"><div class=WordSection1><p class=MsoNormal>Hi,<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>After maker finishes its job it generates many files one of them is gff file. I see the following in some of my gff files. It seems it is a dereferencing problem. I am just wondering if affects my annotation.<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Hamid<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>uti_cns_0004767 est2genome match_part 856428 856485 3090 + . ID=uti_cns_0004767:hsp:8340:3.2.3.8;Parent=uti_cns_0004767:hit:4230:3.2.3<o:p></o:p></p><p class=MsoNormal>uti_cns_0004767 est2genome match_part 856587 856938 3090 + . ID=uti_cns_0004767:hsp:8341:3.2.3.8;Parent=uti_cns_0004767:hit:4230:3.2.3<o:p></o:p></p><p class=MsoNormal>uti_cns_0004767 est2genome match_part 857053 857201 3090 + . ID=uti_cns_0004767:hsp:8342:3.2.3.8;Parent=uti_cns_0004767:hit:4230:3.2.3<o:p></o:p></p><p class=MsoNormal>uti_cns_0004767 est2genome match_part 859004 859041 3090 + . ID=uti_cns_0004767:hsp:8343:3.2.3.8;Parent=uti_cns_0004767:hit:4230:3.2.3<o:p></o:p></p><p class=MsoNormal>uti_cns_0004767 est2genome expressed_sequence_match 878327 878771 1446 + . ID=uti_cns_0004767:hit:4231:3.2.3.8;Name=Sp_Illum_Trans_W<o:p></o:p></p><p class=MsoNormal>uti_cns_0004767 est2genome match_part 878327 878771 1446 + . ID=uti_cns_0004767:hsp:8344:3.2.3.8;Parent=uti_cns_0004767:hit:4231:3.2.3<o:p></o:p></p><p class=MsoNormal>uti_cns_0004767 est2genome expressed_sequence_match 884121 886610 2509 + . ID=uti_cns_0004767:hit:4232:3.2.3.8;Name=Sp_Illum_Trans_W<o:p></o:p></p><p class=MsoNormal>uti_cns_0004767 est2genome match_part 884121 884195 2509 + . ID=uti_cns_0004767:hsp:8345:3.2.3.8;Parent=uti_cns_0004767:hit:4232:3.2.3<o:p></o:p></p><p class=MsoNormal>uti_cns_0004767 est2genome match_part 886180 886610 2509 + . ID=uti_cns_0004767:hsp:8346:3.2.3.8;Parent=uti_cns_0004767:hit:4232:3.2.3<o:p></o:p></p><p class=MsoNormal>ARRAY(0x1b91f110)<o:p></o:p></p><p class=MsoNormal>ARRAY(0x1a686350)<o:p></o:p></p><p class=MsoNormal>ARRAY(0x1b06bba0)<o:p></o:p></p><p class=MsoNormal>ARRAY(0x1b931e10)<o:p></o:p></p><p class=MsoNormal>ARRAY(0x1b13f3a0)<o:p></o:p></p><p class=MsoNormal>ARRAY(0x1b6af650)<o:p></o:p></p><p class=MsoNormal>ARRAY(0x1b929600)<o:p></o:p></p></div></body></html>