<div dir="ltr">If anyone has bugs or suggestions for gag, let us know and we can modify. Right now we are fixing some bugs and applying to new dataset, so good time to add anything people might find useful. email myself or Brian (<a href="mailto:bhall7@hawaii.edu">bhall7@hawaii.edu</a>)<div>Thanks,</div><div><br><div>Scott </div></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Sat, May 16, 2015 at 8:00 AM, <span dir="ltr"><<a href="mailto:maker-devel-request@yandell-lab.org" target="_blank">maker-devel-request@yandell-lab.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Send maker-devel mailing list submissions to<br>
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1. Re: Genbank submission (Fields, Christopher J)<br>
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Message: 1<br>
Date: Sat, 16 May 2015 15:51:49 +0000<br>
From: "Fields, Christopher J" <<a href="mailto:cjfields@illinois.edu">cjfields@illinois.edu</a>><br>
To: Carson Holt <<a href="mailto:carsonhh@gmail.com">carsonhh@gmail.com</a>><br>
Cc: "<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>" <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>>, Bert<br>
Brutzel <<a href="mailto:bertbrutzel@googlemail.com">bertbrutzel@googlemail.com</a>><br>
Subject: Re: [maker-devel] Genbank submission<br>
Message-ID: <<a href="mailto:3A43AEA3-A63A-4AC4-81A3-DA165F048722@illinois.edu">3A43AEA3-A63A-4AC4-81A3-DA165F048722@illinois.edu</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
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We?ve been using GAG (mentioned in this thread), though with some fiddling. I have heard that ENA has a much easier submission process.<br>
<br>
chris<br>
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On May 15, 2015, at 10:48 AM, Carson Holt <<a href="mailto:carsonhh@gmail.com">carsonhh@gmail.com</a><mailto:<a href="mailto:carsonhh@gmail.com">carsonhh@gmail.com</a>>> wrote:<br>
<br>
Here is an archived thread on this that might be useful as well ?><br>
<br>
<a href="https://groups.google.com/forum/#!searchin/maker-devel/genbank/maker-devel/qypkypBXVjs/aJACj38DpxMJ" target="_blank">https://groups.google.com/forum/#!searchin/maker-devel/genbank/maker-devel/qypkypBXVjs/aJACj38DpxMJ</a><br>
<br>
?Carson<br>
<br>
<br>
On May 15, 2015, at 1:08 AM, Bert Brutzel <<a href="mailto:bertbrutzel@googlemail.com">bertbrutzel@googlemail.com</a><mailto:<a href="mailto:bertbrutzel@googlemail.com">bertbrutzel@googlemail.com</a>>> wrote:<br>
<br>
Dear All,<br>
<br>
how to I reformat MAKER output to valid .tbl files for Genbank submission?<br>
I already tried quite some routes of formating the .gff to a .tbl (e.g. sed+awk+GAG....) but I simply run into to many problems? I as well tried to load the data into a chado, but this took over two weeks and exited with errors. Maybe someone who already submitted their MAKER annotated genome to Genbank can help me...PLEASE.<br>
<br>
Thank you very much,<br>
Bert<br>
<br>
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