<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Thanks Panos,<div class=""><br class=""></div><div class="">I’ve heard good things about BUSCO, in fact someone from the CEGMA/SNAP group recommended we try it instead of CEGMA on a project I’m collaborating on.</div><div class=""><br class=""></div><div class="">Cheers,</div><div class="">Carson</div><div class=""><br class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Jun 1, 2015, at 1:55 PM, Panos Ioannidis <<a href="mailto:panos.ioannidis@gmail.com" class="">panos.ioannidis@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class=""><div class=""><div class=""><div class="">Hello MAKER users,<br class=""><br class=""></div>Our lab has recently developed a new tool for genome/transcriptome assembly validation called BUSCO (for Benchmarking Universal Single-Copy Orthologs) (<a href="http://busco.ezlab.org/" target="_blank" class="">busco.ezlab.org</a>). It works in a way similar to CEGMA, but with certain key differences.<br class=""><br class="">One of its important features (that actually "pushed" me to write this post), is that it can train Augustus using the BUSCOs models it identifies in the genome.<br class=""><br class=""></div>The manuscript is accepted in Bioinformatics and will soon be published, but you can already download it from the website above and try it.<br class=""><br class=""></div>And please let me know if you have any questions or problems!<br class=""><br class=""></div>Panos<br class=""></div>
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