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<div class="">From Keith Bradnam’s blog:</div>
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<div class=""><a href="http://www.acgt.me/blog/2015/5/18/goodbye-cegma-hello-busco" class="">http://www.acgt.me/blog/2015/5/18/goodbye-cegma-hello-busco</a></div>
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<div class="">chris</div>
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<div class="">On Jun 1, 2015, at 3:15 PM, Carson Holt <<a href="mailto:carsonhh@gmail.com" class="">carsonhh@gmail.com</a>> wrote:</div>
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Thanks Panos,
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<div class="">I’ve heard good things about BUSCO, in fact someone from the CEGMA/SNAP group recommended we try it instead of CEGMA on a project I’m collaborating on.</div>
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<div class="">Cheers,</div>
<div class="">Carson</div>
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<div class="">On Jun 1, 2015, at 1:55 PM, Panos Ioannidis <<a href="mailto:panos.ioannidis@gmail.com" class="">panos.ioannidis@gmail.com</a>> wrote:</div>
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<div class="">Hello MAKER users,<br class="">
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Our lab has recently developed a new tool for genome/transcriptome assembly validation called BUSCO (for Benchmarking Universal Single-Copy Orthologs) (<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__busco.ezlab.org_&d=AwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=AKkb8CF-lF01USB-JaE2pC35TfJN0Hooxv99KwJ5Pbk&s=RbVHeUwGcQW1WqgFdfRnYPPekTRaFr49a8g_G0Ibj5c&e=" target="_blank" class="">busco.ezlab.org</a>).
It works in a way similar to CEGMA, but with certain key differences.<br class="">
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One of its important features (that actually "pushed" me to write this post), is that it can train Augustus using the BUSCOs models it identifies in the genome.<br class="">
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The manuscript is accepted in Bioinformatics and will soon be published, but you can already download it from the website above and try it.<br class="">
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And please let me know if you have any questions or problems!<br class="">
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Panos<br class="">
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