<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Srividya,<div class=""><br class=""></div><div class="">First make sure you are using the most recent version of MAKER (currently 2.31.8). Some of your error log information suggests that you have an older version. After installing the newest version, delete the mpi_blastdb directory from you current run before retrying.</div><div class=""><br class=""></div><div class="">The errors suggest there are issues either with the sequence you are using, or perhaps with the /tmp directory becoming full on one of your nodes during the run. The current version of MAKER may give you a little more info if it is a sequence file content error.</div><div class=""><br class=""></div><div class="">Thanks,</div><div class="">Carson</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Jun 23, 2015, at 7:52 AM, Srividya Ramakrishnan <<a href="mailto:srividya.ramki@gmail.com" class="">srividya.ramki@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">​<br class=""><div class="gmail_chip gmail_drive_chip" style="width:396px;height:18px;max-height:18px;background-color:#f5f5f5;padding:5px;color:#222;font-family:arial;font-style:normal;font-weight:bold;font-size:13px;border:1px solid #ddd;line-height:1"><a href="https://drive.google.com/file/d/0BxTwS_7TqV3GUVVYSTFPM3M0TDQ/edit?usp=drive_web" target="_blank" style="display:inline-block;overflow:hidden;text-overflow:ellipsis;white-space:nowrap;text-decoration:none;padding:1px 0px;border:medium none;width:100%" class=""><img style="vertical-align: bottom; border: none;" src="https://ssl.gstatic.com/docs/doclist/images/icon_10_generic_list.png" class=""> <span dir="ltr" style="color:#15c;text-decoration:none;vertical-align:bottom" class="">error.log.gz</span></a></div>​Hi ,<div class=""><br class=""></div><div class="">I am trying to run maker on a rice genome assembly. The assembly has about 1074 contigs and maker successfully runs on about 655 contigs and fails on the rest of them. I ran a few times on the failed contigs changing the number of tries , clean try option set to true and also increasing the memory. None of these options worked. Please help me figure out the problem with my maker run. I have attached the error file with this mail</div><div class=""><br class=""></div><div class=""><br class="">Thanks </div><div class=""><br class="">Srividya Ramakrishnan</div><div class="">Computational Science Analyst,</div><div class="">Cold Spring Harbor Laboratory,</div><div class="">1 Bungtown Rd,</div><div class="">Cold Spring Harbor , NY 11743​​</div></div>
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