<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
<font face="Calibri" style="font-size: 14px;" class="">We have a group locally (at NCSA) who is interested in profiling MAKER with various performance analysis tools. They would like to know CPU, RAM, I/O patterns and usage. In particular, we’re seeing some
odd performance problems on a local system which uses a large shared memory cache for storing temp/scratch data (/dev/shm). </font>
<div class="">
<div style="margin: 0in 0in 0.0001pt;" class=""><font face="Calibri" style="font-size: 14px;" class=""> </font></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt;" class=""><font face="Calibri" style="font-size: 14px;" class="">The question is: are there any particular pain points users and developers know of or could point us to that we can start focusing on? Any help would be
greatly appereciated.</font></div>
</div>
<div style="margin: 0in 0in 0.0001pt;" class=""><font face="Calibri" style="font-size: 14px;" class=""><br class="">
</font></div>
<div style="margin: 0in 0in 0.0001pt;" class=""><font face="Calibri" style="font-size: 14px;" class="">Thanks,</font></div>
<div style="margin: 0in 0in 0.0001pt;" class=""><font face="Calibri" style="font-size: 14px;" class=""><br class="">
</font></div>
<div style="margin: 0in 0in 0.0001pt;" class=""><font face="Calibri" style="font-size: 14px;" class="">chris</font></div>
<div style="margin: 0in 0in 0.0001pt;" class=""><font face="Calibri" style="font-size: 14px;" class=""><br class="">
</font></div>
<div style="margin: 0in 0in 0.0001pt;" class=""><b style="font-size: 10px;" class="">Chris Fields</b></div>
<div apple-content-edited="true" class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
<div style="orphans: auto; text-align: start; text-indent: 0px; widows: auto; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
<div style="orphans: auto; text-align: start; text-indent: 0px; widows: auto; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
<div style="orphans: auto; text-align: start; text-indent: 0px; widows: auto; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
<div style="orphans: auto; text-align: start; text-indent: 0px; widows: auto; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
<div style="orphans: auto; text-align: start; text-indent: 0px; widows: auto; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; orphans: auto; text-align: start; text-indent: 0px; widows: auto; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; font-size: 10px;" class="">
<b class="">Technical Lead in Genome Informatics</b></div>
<div style="color: rgb(0, 0, 0); letter-spacing: normal; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; orphans: auto; text-align: start; text-indent: 0px; widows: auto; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; font-size: 10px;" class="">
<b class="">High Performance Computing in Biology</b></div>
<div style="orphans: auto; text-align: start; text-indent: 0px; widows: auto; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
<font size="1" class="">University of Illinois at Urbana-Champaign</font><br class="">
<font size="1" class="">Roy J. Carver Biotechnology Center / W.M. Keck Center</font><br class="">
<font size="1" class="">Carl R. Woese Institute for Genomic Biology</font></div>
<div style="orphans: auto; text-align: start; text-indent: 0px; widows: auto; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
<br class="">
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</body>
</html>