#!/bin/bash --login

. /usr/share/Modules/init/bash


#PBS -N maker

# set the number of nodes and cores
#PBS -l select=4:mpiprocs=8
##PBS -l select=4:mpiprocs=4
##PBS -l place=free

#mail options
#PBS -m bea

#PBS -V

#PBS -S /bin/bash

#PBS -o /molbio/projects/SNP/szarvas/Ce_01_pseudochr/logs/maker_annotation_${PBS_JOBID}.log

#PBS -e /molbio/projects/SNP/szarvas/Ce_01_pseudochr/logs/maker_annotation_${PBS_JOBID}.err

#PBS -M dancsi90@gmail.com

export PERL5LIB="/Users/molbio/bin/danna/maker/lib:/usr/lib/perl5/site_perl/5.8.8:/usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi:/Users/danna/perl5/lib/perl5${PERL5LIB+:}${PERL5LIB}"
#export PERL5LIB="/Users/molbio/bin/danna/maker/lib:/usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi:/Users/danna/perl5/lib/perl5"

export LD_LIBRARY_PATH=/molbio/bin/danna/mpich2-install/lib:$LD_LIBRARY_PATH
#LD_LIBRARY_PATH=/molbio/bin/danna/mpich2-install/lib:/data1/local/lib:${LD_LIBRARY_PATH} export LD_LIBRARY_PATH
export PATH=/molbio/bin/danna/mpich2-install/bin:$PATH

echo "Starting job at `date`"

cd /molbio/projects/SNP/szarvas/Ce_01_pseudochr

/molbio/bin/danna/mpich2-install/bin/mpirun -np 32  /Users/molbio/bin/danna/maker/bin/maker > logs/maker.log 2> logs/maker.err

qstat -f ${PBS_JOBID} #show full listing for jobid