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<p>Hello,<br>
</p>
<p style="margin: 1em 0px; padding: 0px; border: 0px; color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 13px;">
we are using maker (2.31.8) with mvapich2, but the program terminates with a segmentation fault while setting up GFF3 output and fasta chunks. We really have no idea what the problem was. </p>
<p style="margin: 1em 0px; padding: 0px; border: 0px; color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 13px;">
Below is the error message:<br>
</p>
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</p>
<p class="p1">+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</p>
<p class="p1"><span class="s1">setting up GFF3 output and fasta chunks</span></p>
<p class="p1"><span class="s1">setting up GFF3 output and fasta chunks</span></p>
<p class="p1"><span class="s1">setting up GFF3 output and fasta chunks</span></p>
<p class="p1"><span class="s1">setting up GFF3 output and fasta chunks</span></p>
<p class="p1"><span class="s1">setting up GFF3 output and fasta chunks</span></p>
<p class="p1"><span class="s1">setting up GFF3 output and fasta chunks</span></p>
<p class="p1"><span class="s1">[fpga04.cluster:mpi_rank_111][</span><span class="s2">error</span><span class="s1">_sighandler] Caught
</span><span class="s2">error</span><span class="s1">: Segmentation fault (signal 11)</span></p>
<p class="p1"><span class="s1">[fpga04.cluster:mpi_rank_107][</span><span class="s2">error</span><span class="s1">_sighandler] Caught
</span><span class="s2">error</span><span class="s1">: Segmentation fault (signal 11)</span></p>
<p class="p1"><span class="s1">Perl exited with active threads:</span></p>
<p class="p1"><span class="s1"> 1 running and unjoined</span></p>
<p class="p1"><span class="s1"> 0 finished and unjoined</span></p>
<p class="p1"><span class="s1"> 0 running and detached</span></p>
<p class="p1"><span class="s1">[fpga04.cluster:mpi_rank_113][</span><span class="s2">error</span><span class="s1">_sighandler] Caught
</span><span class="s2">error</span><span class="s1">: Segmentation fault (signal 11)</span></p>
<p class="p1"><span class="s1">[fpga04.cluster:mpi_rank_115][</span><span class="s2">error</span><span class="s1">_sighandler] Caught
</span><span class="s2">error</span><span class="s1">: Segmentation fault (signal 11)</span></p>
<p class="p1"><span class="s1">[fpga04.cluster:mpi_rank_114][</span><span class="s2">error</span><span class="s1">_sighandler] Caught
</span><span class="s2">error</span><span class="s1">: Segmentation fault (signal 11)</span></p>
<p class="p1"><span class="s1">[fpga04.cluster:mpi_rank_105][</span><span class="s2">error</span><span class="s1">_sighandler] Caught
</span><span class="s2">error</span><span class="s1">: Segmentation fault (signal 11)</span></p>
<p class="p1"><span class="s1">[fpga04.cluster:mpi_rank_108][</span><span class="s2">error</span><span class="s1">_sighandler] Caught
</span><span class="s2">error</span><span class="s1">: Segmentation fault (signal 11)</span></p>
<p class="p1"><span class="s1">[fpga04.cluster:mpi_rank_110][</span><span class="s2">error</span><span class="s1">_sighandler] Caught
</span><span class="s2">error</span><span class="s1">: Segmentation fault (signal 11)</span></p>
<p class="p1"><span class="s1">[fpga04.cluster:mpi_rank_104][</span><span class="s2">error</span><span class="s1">_sighandler] Caught
</span><span class="s2">error</span><span class="s1">: Segmentation fault (signal 11)</span></p>
<p class="p1"><span class="s1">[fpga04.cluster:mpi_rank_106][</span><span class="s2">error</span><span class="s1">_sighandler] Caught
</span><span class="s2">error</span><span class="s1">: Segmentation fault (signal 11)</span></p>
<span style="color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 13px;">+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</span><br>
<p></p>
<p style="margin: 1em 0px; padding: 0px; border: 0px; color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 13px;">
<span style="color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 13px;">Best regards,</span></p>
<p style="margin: 1em 0px; padding: 0px; border: 0px; color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 13px;">
<span style="color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 13px;">Hua</span></p>
<p></p>
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