<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">If it is just printing out the usage statement, then you have something wrong with your command line.<div class=""><br class=""></div><div class="">If you are getting no results back, then you have no gene models (you may have failed to provide an HMM for the gene predictors.).<br class=""><div class=""><br class=""></div><div class="">Thanks,</div><div class="">Carson</div><div class=""><br class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Jun 1, 2016, at 1:22 PM, Qihua Liang <<a href="mailto:qlian003@ucr.edu" class="">qlian003@ucr.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta http-equiv="Content-Type" content="text/html charset=utf-8" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Maker developers,<div class=""><br class=""></div><div class="">I am trying to get merged fasta/gff3 results. gff3_merge works perfect, but for the same <span style="font-family: Times; font-size: 10pt;" class="">datastore_index.log </span>file, fast_merge doesn’t work as expect. There is no explicit error messages, but printing out </div><div class=""><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">Synopsis:</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0); min-height: 16px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">fasta_merge -d maker_datastore_index.log</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">fasta_merge -o genome.all -i <fasta1> <fasta2> ...</span></div></div><div class="">Actually, I do run as the synopsis indicates, and similar steps work for gff3_merge and I could get the gff3 file. </div><div class=""><br class=""></div><div class="">Is it any explicit reason for this error?</div><div class=""><br class=""></div><div class="">Thanks</div><div class="">Qihua</div></div>_______________________________________________<br class="">maker-devel mailing list<br class=""><a href="mailto:maker-devel@box290.bluehost.com" class="">maker-devel@box290.bluehost.com</a><br class="">http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org<br class=""></div></blockquote></div><br class=""></div></div></body></html>