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<p class="MsoNormal">Hi,</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">I’m trying to install Maker in my cluster account. I have installed all the dependencies. But, there are two issues for which I would like to get a solution. I tried to find it from the forums but helpless.</p>
<p class="MsoListParagraph" style="text-indent:-18.0pt"><span style="">1.<span style="font:7.0pt "Times New Roman"">
</span></span>MPI installation </p>
<p class="MsoListParagraph">“flock: Function not implemented error” at src/lib/Parallel/Application/MPI.pm line 256.</p>
<p class="MsoListParagraph">./Build install</p>
<p class="MsoListParagraph"> </p>
<p class="MsoListParagraph">Configuring MAKER with MPI support</p>
<p class="MsoListParagraph">flock: Function not implemented</p>
<p class="MsoListParagraph">at /scratch/tools/maker_mpi/src/lib/Parallel/Application/MPI.pm line 256.</p>
<p class="MsoListParagraph"> Parallel::Application::MPI::_bind("/app/openmpi/1.10.3/intel_java/bin/mpicc", "/app/openmpi/1.10.3/intel_java/include", "blib", "") called at /scratch/users/astar/imcb/aravindp/tools/maker_mpi/src/inc/lib/MAKER/Build.pm line
277</p>
<p class="MsoListParagraph"> MAKER::Build::ACTION_build(MAKER::Build=HASH(0x1618ac0)) called at /scratch/tools/myperl/lib/perl5/Module/Build/Base.pm line 2010</p>
<p class="MsoListParagraph"> Module::Build::Base::_call_action(MAKER::Build=HASH(0x1618ac0), "build") called at /scratch/tools/myperl/lib/perl5/Module/Build/Base.pm line 1993</p>
<p class="MsoListParagraph"> Module::Build::Base::dispatch(MAKER::Build=HASH(0x1618ac0), "build") called at /aravindp/tools/maker_mpi/src/inc/lib/MAKER/Build.pm line 469</p>
<p class="MsoListParagraph"> MAKER::Build::ACTION_install(MAKER::Build=HASH(0x1618ac0)) called at /scratch/tools/myperl/lib/perl5/Module/Build/Base.pm line 2010</p>
<p class="MsoListParagraph"> Module::Build::Base::_call_action(MAKER::Build=HASH(0x1618ac0), "install") called at /scratch/tools/myperl/lib/perl5/Module/Build/Base.pm line 1998</p>
<p class="MsoListParagraph"> Module::Build::Base::dispatch(MAKER::Build=HASH(0x1618ac0)) called at ./Build line 69
</p>
<p class="MsoListParagraph"> </p>
<p class="MsoListParagraph" style="text-indent:-18.0pt"><span style="">2.<span style="font:7.0pt "Times New Roman"">
</span></span>When I run a serial version of Maker, I get an error as follow in the “makerlog.e” file.</p>
<p class="MsoListParagraph"> </p>
<p class="MsoListParagraph">DBD::SQLite::db do failed: disk I/O error at /scratch/tools/maker/bin/../lib/GFFDB.pm line 109.</p>
<p class="MsoListParagraph">DBD::SQLite::db selectcol_arrayref failed: disk I/O error at /scratch/tools/maker/bin/../lib/GFFDB.pm line 111.</p>
<p class="MsoListParagraph">DBD::SQLite::db do failed: disk I/O error at /scratch/tools/maker/bin/../lib/GFFDB.pm line 113.</p>
<p class="MsoListParagraph">DBD::SQLite::db selectcol_arrayref failed: disk I/O error at /scratch/tools/maker/bin/../lib/GFFDB.pm line 191.</p>
<p class="MsoListParagraph">DBD::SQLite::db selectcol_arrayref failed: disk I/O error at /scratch/tools/maker/bin/../lib/GFFDB.pm line 390.</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Please help me with these errors as early as possible. I have double checked for all the dependencies and the file paths given while running Maker.</p>
<p class="MsoNormal">Awaiting your reply!</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal"> </p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Regards,</p>
<p class="MsoNormal"><b><span style="font-size:10.0pt; font-family:"Times New Roman","serif"; color:#002060"><a href="mailto:aravindp@imcb.a-star.edu.sg">Aravind PRASAD</a> :: Research Officer :: Comparative and Medical Genomics Lab :: Institue of Molecular
and Cell Biology (IMCB) :: Agency for Science, Technology and Research (A*STAR)</span></b></p>
<p class="MsoNormal"><span style="font-size:9.0pt; font-family:"Times New Roman","serif"; color:#4F81BD">61 Biopolis Drive :: #5-04 Proteos :: Singapore 138673:: DID (+65) 6586 9573 :: Fax (+65) 6779 1117 :: http:/www.imcb.a-star.edu.sg/</span></p>
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