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<div class="">Hi Amine,</div>
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I was getting similar error. You need to be careful with the blast versions. Try using the same blast version for makeblastdb. I was using BLAST 2.2.29+. After recreating new blast database with same version, it worked for me.
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<div class="">Hope this helps.</div>
<div class="">Prashant</div>
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<div class="">Prashant Hosmani</div>
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<div dir="ltr" style="font-family: arial; font-size: small;" class="">Sol Genomics Network<br class="">
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<div style="font-family: arial; font-size: small;" class="">Boyce Thompson Institute, Ithaca, NY, USA</div>
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<div class="">On Nov 3, 2016, at 1:57 PM, Michael Campbell <<a href="mailto:michael.s.campbell1@gmail.com" class="">michael.s.campbell1@gmail.com</a>> wrote:</div>
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Hi Amine,
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<div class="">That script is maintained by Ning Jiang and Kevin Childs. They know best what this script is expecting. I’ve ccd them on this email in the hope that they can provide some direction.</div>
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<div class="">Thanks,</div>
<div class="">Mike<br class="">
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<div class="">On Nov 2, 2016, at 2:09 PM, Mohamed Amine Chebbi <<a href="mailto:mohamed.amine.chebbi@univ-poitiers.fr" class="">mohamed.amine.chebbi@univ-poitiers.fr</a>> wrote:</div>
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<div style="margin: 0px;" class=""><span style="font-size: 12pt; line-height: 115%; font-family: 'Times New Roman', serif; background-color: white; background-position: initial initial; background-repeat: initial initial;" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif'; color: black; background: white;" class="">Hi!</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12pt; line-height: 115%; font-family: 'Times New Roman', serif; background-color: white; background-position: initial initial; background-repeat: initial initial;" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif'; color: black; background: white;" class=""><br data-mce-bogus="1" class="">
</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12pt; line-height: 115%; font-family: 'Times New Roman', serif; background-color: white; background-position: initial initial; background-repeat: initial initial;" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif'; color: black; background: white;" class="">I
am working on creating a custom repeat library and I want to use ProtExcluder1.2 to trim potential genes from my repeat sequences.
</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12pt; line-height: 115%; font-family: 'Times New Roman', serif; background-color: white; background-position: initial initial; background-repeat: initial initial;" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif'; color: black; background: white;" class="">My
blast version is BLAST 2.2.30+<br class="">
</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12pt; line-height: 115%; font-family: 'Times New Roman', serif; background-color: white; background-position: initial initial; background-repeat: initial initial;" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif'; color: black; background: white;" class=""><br data-mce-bogus="1" class="">
</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12pt; line-height: 115%; font-family: 'Times New Roman', serif; background-color: white; background-position: initial initial; background-repeat: initial initial;" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif'; color: black; background: white;" class="">I
get this message error :</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" class=""><br data-mce-bogus="1" class="">
</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" class="">Can not open the seqfile test.lib_blast_results.txt.fnolowm50seq</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" class="">mergeunmatchedregion.pl seqfile</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" class="">Illegal division by zero at
ProtExcluder1.2/GCcontent.pl line 122.</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" class=""><br data-mce-bogus="1" class="">
</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" class="">I wonder if you can help me
to fix this. </span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" class=""><br data-mce-bogus="1" class="">
</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" class="">Thank you.</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" class=""><br data-mce-bogus="1" class="">
</span></div>
<div style="margin: 0px;" class=""><span style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" data-mce-style="font-size: 12.0pt; line-height: 115%; font-family: 'Times New Roman','serif';" class="">Amine</span></div>
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