<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">The issue is probably with the format of your GFF3. I can take a look if you want.<div class=""><br class=""></div><div class="">—Carson<br class=""><div class=""><br class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Feb 5, 2017, at 6:15 AM, Alisa Postma <<a href="mailto:alisa.postma@gmail.com" class="">alisa.postma@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Good afternoon<div class=""><br class=""><div class="">I am having problems with my all.maker.proteins.fasta file.</div><div class=""><br class=""></div><div class="">I ran maker with ab initio gene predictions from augustus and genemark and I added my fgenesh gff file to the pred_gff option in the ctl file.</div><div class=""><br class=""></div><div class="">However, my maker protein fasta file does not give the fgenesh proteins IDs similar to that for augustus and genemark. </div></div><div class=""><br class=""></div><div class="">For example: </div><div class=""><p class="gmail-p1"><span class="gmail-s1">>FGENESH protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|3|0|433</span></p><p class="gmail-p1">vs.</p><div class=""><span class="gmail-s1">
</span><br class="webkit-block-placeholder"></div><p class="gmail-p1"><span class="gmail-s1">>maker-scaffold74-augustus-gene-0.179-mRNA-1 protein AED:0.07 eAED:0.07 QI:123|1|1|1|1|1|5|793|326</span></p><p class="gmail-p1">I would appreciate any advice on this matter.</p><p class="gmail-p1">Kind regards</p><p class="gmail-p1">Alisa</p></div></div>
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