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<div>Just a note: when we install MAKER we generally install a clean version of perl if one isn’t already present, making sure it is on the NFS share for the cluster (which is accessible via all nodes). This works around most of the issues you describe. </div>
<div><br>
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<div>chris</div>
<div><br>
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<span style="font-weight:bold">From: </span>maker-devel <<a href="mailto:maker-devel-bounces@yandell-lab.org">maker-devel-bounces@yandell-lab.org</a>> on behalf of Seth Munholland <<a href="mailto:munholl@uwindsor.ca">munholl@uwindsor.ca</a>><br>
<span style="font-weight:bold">Date: </span>Tuesday, February 21, 2017 at 4:26 PM<br>
<span style="font-weight:bold">To: </span>Carson Holt <<a href="mailto:carsonhh@gmail.com">carsonhh@gmail.com</a>><br>
<span style="font-weight:bold">Cc: </span>"<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>" <<a href="mailto:maker-devel@yandell-lab.org">maker-devel@yandell-lab.org</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [maker-devel] MAKER can't find forks in @INC, but it is there<br>
</div>
<div><br>
</div>
<blockquote id="MAC_OUTLOOK_ATTRIBUTION_BLOCKQUOTE" style="BORDER-LEFT: #b5c4df 5 solid; PADDING:0 0 0 5; MARGIN:0 0 0 5;">
<div>
<div>
<div dir="ltr">I found my errors. <br>
<br>
1) In my machine file; the first entry was not the main node, so locate was looking on a different node than Maker<br>
2) forks (and other modules) were not properly installed on every node in the cluster. I used CPAN to install them on each cluster and it is now working.<br>
</div>
<div class="gmail_extra"><br clear="all">
<div>
<div class="gmail_signature" data-smartmail="gmail_signature">
<div dir="ltr">
<div>Seth Munholland, B.Sc.<br>
</div>
<div>Department of Biological Sciences<br>
Rm. 304 Biology Building<br>
University of Windsor<br>
401 Sunset Ave. N9B 3P4<br>
T: <a value="+15192533000">(519) 253-3000 Ext: 4755</a></div>
</div>
</div>
</div>
<br>
<div class="gmail_quote">On Tue, Feb 21, 2017 at 1:05 PM, Seth Munholland <span dir="ltr">
<<a href="mailto:munholl@uwindsor.ca" target="_blank">munholl@uwindsor.ca</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">
<div>I wasn't sure what modules were separated (figured it was wroth a shot), however, I did the force install of forks and I still get the same error. I tried uninstalling and reinstalling all the forks installations that showed up and commented out the PERL5LIB
export I had in my ~/.bashrc (then reloaded) to make sure I wasn't getting some kind of conflicting libraries/modules. and I'm back to:<br>
<br>
Can't locate <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=AhngRV9BHsEMtXHfii3OViWN2IWFAFC83NSoJ2DKMvw&e=" target="_blank">
forks.pm</a> in @INC (you may need to install the forks module) (@INC contains: /Data/Apps/maker/bin/../perl/<wbr>lib /Data/Apps/maker/bin/../lib /Data/Apps/maker/bin/../src/<wbr>inc/perl/lib /etc/perl /usr/local/lib/x86_64-linux-<wbr>gnu/perl/5.22.1 /usr/local/share/perl/5.22.1
/usr/lib/x86_64-linux-gnu/<wbr>perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/<wbr>perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/<wbr>perl-base .) at /Data/Apps/maker/bin/maker line 42.<span class=""><br>
BEGIN failed--compilation aborted at /Data/Apps/maker/bin/maker line 42.<br>
<br>
</span></div>
<div>along with:<br>
</div>
<div><br>
$ sudo updatedb<br>
</div>
<span class="">
<div>$ locate <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=AhngRV9BHsEMtXHfii3OViWN2IWFAFC83NSoJ2DKMvw&e=" target="_blank">
forks.pm</a><br>
/home/seth/.cpan/build/forks-<wbr>0.36-0/blib/lib/<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=AhngRV9BHsEMtXHfii3OViWN2IWFAFC83NSoJ2DKMvw&e=" target="_blank">forks.pm</a><br>
/home/seth/.cpan/build/forks-<wbr>0.36-0/lib/<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=AhngRV9BHsEMtXHfii3OViWN2IWFAFC83NSoJ2DKMvw&e=" target="_blank">forks.pm</a><br>
/usr/local/lib/x86_64-linux-<wbr>gnu/perl/5.22.1/<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=AhngRV9BHsEMtXHfii3OViWN2IWFAFC83NSoJ2DKMvw&e=" target="_blank">forks.pm</a><br>
</div>
<div><br>
</div>
</span>
<div>Now it's a maker issue, not a forks issue (if I'm reading it correctly), so I reinstalled Maker (made sure to direct to mpicc and mpi.h properly) and got:<br>
<br>
$ sudo ./Build install<br>
Installing MAKER...<br>
Configuring MAKER with MPI support<br>
Skip /Data/Apps/maker/src/../perl/<wbr>config-x86_64-linux-gnu-<wbr>thread-multi-5.022001 (unchanged)<br>
<br>
</div>
<div>I don't believe that's an error or even a warning, but I get the same "can't locate forks" error when I try to run it.<br>
</div>
<div><br>
</div>
</div>
<div class="gmail_extra"><span class=""><br clear="all">
<div>
<div class="m_-3800276434119855856gmail_signature" data-smartmail="gmail_signature">
<div dir="ltr">
<div>Seth Munholland, B.Sc.<br>
</div>
<div>Department of Biological Sciences<br>
Rm. 304 Biology Building<br>
University of Windsor<br>
401 Sunset Ave. N9B 3P4<br>
T: <a value="+15192533000">(519) 253-3000 Ext: 4755</a></div>
</div>
</div>
</div>
<br>
</span>
<div>
<div class="h5">
<div class="gmail_quote">On Tue, Feb 21, 2017 at 12:19 PM, Carson Holt <span dir="ltr">
<<a href="mailto:carsonhh@gmail.com" target="_blank">carsonhh@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">forks::signals is part of forks. It’s not a separate package. If it’s missing, there is a problem with the forks installation. So you need to do a force install of forks to force the reinstall.
<div><br>
</div>
<div>Example —> cpan[1]> force install forks
<div><span class="m_-3800276434119855856HOEnZb"><font color="#888888">
<div><br>
</div>
<div>—Carson</div>
</font></span>
<div>
<div class="m_-3800276434119855856h5">
<div><br>
</div>
<div><br>
<div>
<blockquote type="cite">
<div>On Feb 21, 2017, at 10:17 AM, Seth Munholland <<a href="mailto:munholl@uwindsor.ca" target="_blank">munholl@uwindsor.ca</a>> wrote:</div>
<br class="m_-3800276434119855856m_257420633505297433Apple-interchange-newline">
<div>
<div dir="ltr">
<div>I tried this and still get the same error. Then I tried forcing a reinstall of forks/signals and got:<br>
<br>
cpan[1]> install forks::signals<br>
Warning: Cannot install forks::signals, don't know what it is.<br>
Try the command<br>
<br>
i /forks::signals/<br>
<br>
to find objects with matching identifiers.<br>
<br>
</div>
but scrolling through the install scroll of the forks reinstall I do see it got installed properly.<br>
<div><br>
</div>
</div>
<div class="gmail_extra"><br clear="all">
<div>
<div class="m_-3800276434119855856m_257420633505297433gmail_signature" data-smartmail="gmail_signature">
<div dir="ltr">
<div>Seth Munholland, B.Sc.<br>
</div>
<div>Department of Biological Sciences<br>
Rm. 304 Biology Building<br>
University of Windsor<br>
401 Sunset Ave. N9B 3P4<br>
T: <a value="+15192533000">(519) 253-3000 Ext: 4755</a></div>
</div>
</div>
</div>
<br>
<div class="gmail_quote">On Fri, Feb 17, 2017 at 3:39 PM, Carson Holt <span dir="ltr">
<<a href="mailto:carsonhh@gmail.com" target="_blank">carsonhh@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">Do a force reinstall of forks via CPAN. The error is coming from <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">forks.pm</a> line
83, so the problem is the forks installation itself.
<div><br>
</div>
<div>Thanks,</div>
<div>Carson<br>
<div><br>
</div>
<div><br>
<div>
<blockquote type="cite">
<div>
<div class="m_-3800276434119855856m_257420633505297433h5">
<div>On Feb 17, 2017, at 1:11 PM, Seth Munholland <<a href="mailto:munholl@uwindsor.ca" target="_blank">munholl@uwindsor.ca</a>> wrote:</div>
<br class="m_-3800276434119855856m_257420633505297433m_4928129430173910275Apple-interchange-newline">
</div>
</div>
<div>
<div>
<div class="m_-3800276434119855856m_257420633505297433h5">
<div dir="ltr">
<div>
<div>Hi Everyone,<br>
<br>
</div>
After sorting my MPICH/OpenMPI issue I have come across another: When I try to run MAKER on the demo data via<br>
<br>
$ mpiexec -machinefile /Data/machinefile -n 4 /Data/Apps/maker/bin/maker /Data/Apps/maker/data/maker_ex<wbr>e.ctl /Data/Apps/maker/data/maker_op<wbr>ts.ctl /Data/Apps/maker/data/maker_bo<wbr>pts.ctl<br>
<br>
</div>
<div>(-n 4 because I have 4 nodes in my MPI cluster and I wanted to get it working before opening up, if I change the -n value then the error repeats once for each process I attempt to run via MPICH) I got the following:<br>
<br>
Can't locate <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> in @INC (you may need to install the forks::signals module) (@INC contains: /Data/Apps/maker/bin/../perl/l<wbr>ib /Data/Apps/maker/bin/../lib /Data/Apps/maker/bin/../src/in<wbr>c/perl/lib /Data/Apps/CEGMA_v2.5/lib /etc/perl /usr/local/lib/x86_64-linux-gn<wbr>u/perl/5.22.1
/usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl<wbr>5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl<wbr>/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl<wbr>-base .) at
<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 83.<br>
BEGIN failed--compilation aborted at <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 84.<br>
Compilation failed in require at /Data/Apps/maker/bin/maker line 42.<br>
BEGIN failed--compilation aborted at /Data/Apps/maker/bin/maker line 42.<br>
Undefined subroutine &threads::_END called at (eval 2) line 1.<br>
END failed--call queue aborted at /Data/Apps/maker/bin/maker line 42.<br>
Can't locate <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> in @INC (you may need to install the forks::signals module) (@INC contains: /Data/Apps/maker/bin/../perl/l<wbr>ib /Data/Apps/maker/bin/../lib /Data/Apps/maker/bin/../src/in<wbr>c/perl/lib /Data/Apps/CEGMA_v2.5/lib /etc/perl /usr/local/lib/x86_64-linux-gn<wbr>u/perl/5.22.1
/usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl<wbr>5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl<wbr>/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl<wbr>-base .) at
<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 83.<br>
BEGIN failed--compilation aborted at <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 84.<br>
Compilation failed in require at /Data/Apps/maker/bin/maker line 42.<br>
BEGIN failed--compilation aborted at /Data/Apps/maker/bin/maker line 42.<br>
Undefined subroutine &threads::_END called at (eval 2) line 1.<br>
END failed--call queue aborted at /Data/Apps/maker/bin/maker line 42.<br>
Can't locate <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> in @INC (you may need to install the forks::signals module) (@INC contains: /Data/Apps/maker/bin/../perl/l<wbr>ib /Data/Apps/maker/bin/../lib /Data/Apps/maker/bin/../src/in<wbr>c/perl/lib /Data/Apps/CEGMA_v2.5/lib /etc/perl /usr/local/lib/x86_64-linux-gn<wbr>u/perl/5.22.1
/usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl<wbr>5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl<wbr>/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl<wbr>-base .) at
<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 83.<br>
BEGIN failed--compilation aborted at <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 84.<br>
Compilation failed in require at /Data/Apps/maker/bin/maker line 42.<br>
BEGIN failed--compilation aborted at /Data/Apps/maker/bin/maker line 42.<br>
Undefined subroutine &threads::_END called at (eval 2) line 1.<br>
END failed--call queue aborted at /Data/Apps/maker/bin/maker line 42.<br>
Can't locate <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> in @INC (you may need to install the forks::signals module) (@INC contains: /Data/Apps/maker/bin/../perl/l<wbr>ib /Data/Apps/maker/bin/../lib /Data/Apps/maker/bin/../src/in<wbr>c/perl/lib /Data/Apps/CEGMA_v2.5/lib /etc/perl /usr/local/lib/x86_64-linux-gn<wbr>u/perl/5.22.1
/usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl<wbr>5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl<wbr>/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl<wbr>-base .) at
<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 83.<br>
BEGIN failed--compilation aborted at <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 84.<br>
Compilation failed in require at /Data/Apps/maker/bin/maker line 42.<br>
BEGIN failed--compilation aborted at /Data/Apps/maker/bin/maker line 42.<br>
Undefined subroutine &threads::_END called at (eval 2) line 1.<br>
END failed--call queue aborted at /Data/Apps/maker/bin/maker line 42.<br>
<br>
</div>
<div>However I also see<br>
$ locate <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a><br>
/home/seth/.cpan/build/forks-0<wbr>.36-0/blib/lib/<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">forks.pm</a><br>
/home/seth/.cpan/build/forks-0<wbr>.36-0/lib/<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">forks.pm</a><br>
/usr/local/lib/x86_64-linux-gn<wbr>u/perl/5.22.1/<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">forks.pm</a><br>
<br>
</div>
<div>Since /usr/local/lib/x86_64-linux-gn<wbr>u/perl/5.22.1 is in INC I initially thought this was a Perl error. I hit up perlmonks and found that there is an issue between forks and Storable, where Storable now has a verion number of X.Y_Z but forks is only
looking for X.Y (no _Z). I followed these instructions <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__rt.cpan.org_Public_Bug_Display.html-3Fid-3D102730&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=yUtqaTYl3_yoaALp6kXKDMLyYyPeO27hCpGA9ZDa2aI&e=" target="_blank">
https://rt.cpan.org/Public/Bug<wbr>/Display.html?id=102730</a> and tried again. Now I get:<br>
<br>
$ mpiexec -machinefile /Data/machinefile -n 4 /Data/Apps/maker/bin/maker /Data/Apps/maker/data/maker_ex<wbr>e.ctl /Data/Apps/maker/data/maker_op<wbr>ts.ctl /Data/Apps/maker/data/maker_bo<wbr>pts.ctl<br>
Can't locate forks/<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__signals.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=Lv9HG6NdldD5sEszBIdTXcGprdMY82E2SdOstQ3E0rI&e=" target="_blank">signals.pm</a>
in @INC (you may need to install the forks::signals module) (@INC contains: /Data/Apps/maker/bin/../perl/l<wbr>ib /Data/Apps/maker/bin/../lib /Data/Apps/maker/bin/../src/in<wbr>c/perl/lib /Data/Apps/CEGMA_v2.5/lib /etc/perl /usr/local/lib/x86_64-linux-gn<wbr>u/perl/5.22.1
/usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl<wbr>5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl<wbr>/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl<wbr>-base .) at
<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 83.<br>
BEGIN failed--compilation aborted at <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 84.<br>
Compilation failed in require at /Data/Apps/maker/bin/maker line 42.<br>
BEGIN failed--compilation aborted at /Data/Apps/maker/bin/maker line 42.<br>
Undefined subroutine &threads::_END called at (eval 2) line 1.<br>
END failed--call queue aborted at /Data/Apps/maker/bin/maker line 42.<br>
Can't locate forks/<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__signals.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=Lv9HG6NdldD5sEszBIdTXcGprdMY82E2SdOstQ3E0rI&e=" target="_blank">signals.pm</a>
in @INC (you may need to install the forks::signals module) (@INC contains: /Data/Apps/maker/bin/../perl/l<wbr>ib /Data/Apps/maker/bin/../lib /Data/Apps/maker/bin/../src/in<wbr>c/perl/lib /Data/Apps/CEGMA_v2.5/lib /etc/perl /usr/local/lib/x86_64-linux-gn<wbr>u/perl/5.22.1
/usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl<wbr>5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl<wbr>/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl<wbr>-base .) at
<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 83.<br>
BEGIN failed--compilation aborted at <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 84.<br>
Compilation failed in require at /Data/Apps/maker/bin/maker line 42.<br>
BEGIN failed--compilation aborted at /Data/Apps/maker/bin/maker line 42.<br>
Undefined subroutine &threads::_END called at (eval 2) line 1.<br>
END failed--call queue aborted at /Data/Apps/maker/bin/maker line 42.<br>
Can't locate forks/<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__signals.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=Lv9HG6NdldD5sEszBIdTXcGprdMY82E2SdOstQ3E0rI&e=" target="_blank">signals.pm</a>
in @INC (you may need to install the forks::signals module) (@INC contains: /Data/Apps/maker/bin/../perl/l<wbr>ib /Data/Apps/maker/bin/../lib /Data/Apps/maker/bin/../src/in<wbr>c/perl/lib /Data/Apps/CEGMA_v2.5/lib /etc/perl /usr/local/lib/x86_64-linux-gn<wbr>u/perl/5.22.1
/usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl<wbr>5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl<wbr>/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl<wbr>-base .) at
<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 83.<br>
BEGIN failed--compilation aborted at <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 84.<br>
Compilation failed in require at /Data/Apps/maker/bin/maker line 42.<br>
BEGIN failed--compilation aborted at /Data/Apps/maker/bin/maker line 42.<br>
Undefined subroutine &threads::_END called at (eval 2) line 1.<br>
END failed--call queue aborted at /Data/Apps/maker/bin/maker line 42.<br>
Can't locate forks/<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__signals.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=Lv9HG6NdldD5sEszBIdTXcGprdMY82E2SdOstQ3E0rI&e=" target="_blank">signals.pm</a>
in @INC (you may need to install the forks::signals module) (@INC contains: /Data/Apps/maker/bin/../perl/l<wbr>ib /Data/Apps/maker/bin/../lib /Data/Apps/maker/bin/../src/in<wbr>c/perl/lib /Data/Apps/CEGMA_v2.5/lib /etc/perl /usr/local/lib/x86_64-linux-gn<wbr>u/perl/5.22.1
/usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl<wbr>5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl<wbr>/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl<wbr>-base .) at
<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 83.<br>
BEGIN failed--compilation aborted at <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__forks.pm_&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=PL_vqUhNnKqhtQS6zHa9WJqgP5Vr3Qe-GdG8b6vSQ3I&s=0Z1KKponkoECKirOiDa54NEpvw0BLgDsqyitFbzXW50&e=" target="_blank">
forks.pm</a> line 84.<br>
Compilation failed in require at /Data/Apps/maker/bin/maker line 42.<br>
BEGIN failed--compilation aborted at /Data/Apps/maker/bin/maker line 42.<br>
Undefined subroutine &threads::_END called at (eval 2) line 1.<br>
END failed--call queue aborted at /Data/Apps/maker/bin/maker line 42.<br>
<br>
</div>
<div>Clearly MAKER has an issue with forks, but it is installed, it is up to date (I double checked via cpan and apt-get to be sure), and it is in a directory that is in @INC. Should I pursue this as a MAKER error or as a Perl error?<br>
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<div class="m_-3800276434119855856m_257420633505297433m_4928129430173910275gmail_signature">
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<div>Seth Munholland, B.Sc.<br>
</div>
<div>Department of Biological Sciences<br>
Rm. 304 Biology Building<br>
University of Windsor<br>
401 Sunset Ave. N9B 3P4<br>
T: <a value="+15192533000">(519) 253-3000 Ext: 4755</a></div>
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______________________________<wbr>_________________<br>
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