<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">You may have to contact RepBase via e-mail to find out how to get the libraries compatible with RepeatMasker 4.0.6 as it looks like they have removed the previous release from the website.<div class=""><br class=""></div><div class="">The last release for 4.0.6 was —> repeatmaskerlibraries-20160829.tar.gz</div><div class=""><br class=""></div><div class="">—Carson</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On May 3, 2017, at 9:55 AM, Carson Holt <<a href="mailto:carsonhh@gmail.com" class="">carsonhh@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta http-equiv="Content-Type" content="text/html charset=utf-8" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">You may want to use the previous version of both as the new version may still have hidden bugs.<div class=""><br class=""></div><div class="">—Carson</div><div class=""><br class=""><div class=""><blockquote type="cite" class=""><div class="">On May 3, 2017, at 9:53 AM, Carson Holt <<a href="mailto:carsonhh@gmail.com" class="">carsonhh@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta http-equiv="Content-Type" content="text/html charset=utf-8" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">RepBase and RepeatMasker have changed structure with the new 4.0.7 released two months ago. The new version and RepBase is only compatible with the new version of RepeatMasker. You have to update both (complete reinstall). Or you have to use the previous version of RepeatMasker with the previous version of RepBase.<div class=""><br class=""></div><div class="">—Carson</div><div class=""><br class=""><div class=""><br class=""></div><div class=""><br class=""><div class=""><blockquote type="cite" class=""><div class="">On May 3, 2017, at 6:15 AM, 卢金原Jim <<a href="mailto:jim03ljy@126.com" class="">jim03ljy@126.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div style="line-height: 1.7; font-size: 14px; font-family: Arial;" class=""><div class=""><span style="font-size: 14px;" class="">Hi, I'm a newbie of maker.</span></div><div class=""><span style="font-size: 14px;" class="">I met some errors in Repeatmasker step.</span></div><div class=""><br class=""></div><div class=""><span style="font-size: 14px;" class="">The error is here:</span></div><div class=""><div style="margin: 0in; font-size: 10.5pt;" class=""><span style="font-family: Calibri; font-size: 14px;" class="">NCBIBlastSearchEngine::search: Error...compressed subject database
(/home/softwares/RepeatMasker/Libraries/20170127/general/is.lib)
does not exist!</span></div><div style="margin: 0in; font-size: 10.5pt;" class=""><span style="font-family: Calibri; font-size: 14px;" class=""><br class=""></span></div><div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class=""><span style="font-size: 14px;" class="">I tried ncbi+blast 2.5.0 version and 2.6.0 version as the path to blast, both have the same error.</span></font></div><div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class=""><span style="font-size: 14px;" class="">And when I use the command as "maker -R", which skips the repeatmasker step, the maker could work.</span></font></div><div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class=""><span style="font-size: 14px;" class="">I checked the former similar errors reported by another user and he solved the problem by updating the RepBase.</span></font></div><div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class=""><span style="font-size: 14px;" class="">So,</span></font></div><div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class=""><span style="font-size: 14px;" class=""> I deleted and re-installed the RepeatMasker, updated the RepBase, also installed RMblast.</span></font></div><div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class=""><span style="font-size: 14px;" class="">The error is the same.</span></font></div><div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class=""><br class=""></font></div><div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class=""><span style="font-size: 14px;" class="">I'm stuck in the problem now.</span></font></div><div style="margin: 0in; font-size: 10.5pt;" class=""><span style="color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 14px;" class="">Would highly appreciate any help - thanks!</span></div><div style="margin: 0in; font-size: 10.5pt;" class=""><br class=""></div></div><div style="position:relative;zoom:1" class=""><div class=""><font class="Apple-style-span" face="'Times New Roman'" size="4" style="font-size: 18px; "><span style="font-size: 14px;" class="">Jinyuan Lu</span></font></div><span style="font-family: 微软雅黑; line-height: 27px; font-size: 14px;" class="">Shanghai Jiao Tong University</span><font class="Apple-style-span" face="'lucida Grande', Verdana"><br class=""></font><span style="font-family: "lucida Grande", Verdana; line-height: 23px; font-size: 14px;" class="">No. 800 Dong Chuan Road,Minhang District, Shanghai, P.R. China</span><div style="clear:both" class=""></div></div></div>_______________________________________________<br class="">maker-devel mailing list<br class=""><a href="mailto:maker-devel@box290.bluehost.com" class="">maker-devel@box290.bluehost.com</a><br class=""><a href="http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org" class="">http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org</a><br class=""></div></blockquote></div><br class=""></div></div></div></div></blockquote></div><br class=""></div></div></div></blockquote></div><br class=""></div></body></html>